Browse Element(s) Details


Os.16984.2.S1_a_at

Description gb:AK062798.1
DB_XREF= gi:32972816
TID=Os.16984.2
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16984 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative RNA Binding Protein 45 (OSJNBa0036M16.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-107-C10, full insert sequence.
FL= gb:AK065559.1 gb:AK062798.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3333011/11RNA Binding Protein 45, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g33280Os.6516.1.S1_at11/117+19897516..19898337expressed protein
LOC_Os07g33290OsAffx.10075.1.S1_at4/117+19902255..19903268hypothetical protein
LOC_Os07g33300OsAffx.5514.2.S1_at11/117+19903331..19907930expressed protein
LOC_Os07g33300Os.28197.1.S2_at11/117+19903331..19907930expressed protein
LOC_Os07g33300Os.28197.1.S1_a_at10/117+19903331..19907930expressed protein
LOC_Os07g33300OsAffx.5514.1.S1_x_at4/117+19903331..19907930expressed protein
LOC_Os07g33310Os.14708.1.S1_at11/117+19909672..19912872MATE efflux family protein, expressed
LOC_Os07g33310Os.14708.2.S1_at5/117+19909672..19912872MATE efflux family protein, expressed
LOC_Os07g33320OsAffx.28727.1.S1_at11/117+19915361..19915690expressed protein
LOC_Os07g33330Os.16984.2.S1_a_at11/117+19918642..19922640RNA Binding Protein 45, putative, expressed
LOC_Os07g33340Os.24708.1.S1_at11/117+19924412..19930300DEAD/DEAH box helicase family protein, expressed
LOC_Os07g33350Os.49631.2.S1_x_at11/117+19933799..19934729Hsp20/alpha crystallin family protein, expressed
LOC_Os07g33360Os.24533.1.S1_x_at11/117+19936793..19941475chromosoma associate protein subunit H2, putative, expressed
LOC_Os07g33360Os.24533.1.S1_at11/117+19936793..19941475chromosoma associate protein subunit H2, putative, expressed
LOC_Os07g33360Os.46297.1.S1_at11/117+19936793..19941475chromosoma associate protein subunit H2, putative, expressed
LOC_Os07g33370OsAffx.22295.2.S1_at11/117+19942549..19949361IQ calmodulin-binding motif family protein, expressed
LOC_Os07g33370OsAffx.22295.2.S1_x_at11/117+19942549..19949361IQ calmodulin-binding motif family protein, expressed
LOC_Os07g33370OsAffx.22295.1.S1_at7/117+19942549..19949361IQ calmodulin-binding motif family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16984.2.S1_a_at--154--3871Chr07:19920037..19920061 (25 bp)
CTGATGTTACAGACTCCATGTTGGA
LOC_Os07g33330
Os.16984.2.S1_a_at--874--5391Chr07:19920063..19920087 (25 bp)
GAAGCATTCAAAACCAGTTATCCTT
LOC_Os07g33330
Os.16984.2.S1_a_at--531--6791Chr07:19920079..19920103 (25 bp)
GTTATCCTTCAGTTAGAGGAGCCAA
LOC_Os07g33330
Os.16984.2.S1_a_at--486--10251Chr07:19920111..19920135 (25 bp)
TTTGACAAAGTCACTGGGCGATCCA
LOC_Os07g33330
Os.16984.2.S1_a_at--57--1171Chr07:19920119..19920143 (25 bp)
AGTCACTGGGCGATCCAAGGGATAT
LOC_Os07g33330
Os.16984.2.S1_a_at--111--6511Chr07:19920139..19920163 (25 bp)
GATATGGTTTTGTACGTTTTGGAGA
LOC_Os07g33330
Os.16984.2.S1_a_at--8--5151Chr07:19920173..19920197 (25 bp)
GCAAACACGTGCTATGACTGAGATG
LOC_Os07g33330
Os.16984.2.S1_a_at--34--671Chr07:19920195..19920219 (25 bp)
ATGAATGGAGCGACCTTGTCTACAA
LOC_Os07g33330
Os.16984.2.S1_a_at--231--9851Chr07:19920215..19920239 (25 bp)
TACAAGGCAAATGAGGCTTGGGCCG
LOC_Os07g33330
Os.16984.2.S1_a_at--822--10591Chr07:19920232..19920256 (25 bp)
TTGGGCCGGCAGCTAACAAGAAGAA
LOC_Os07g33330
Os.16984.2.S1_a_at--127--7851Chr07:19920261..19920285 (25 bp)
GGTACCCAGCAGACATATTCAACAA
LOC_Os07g33330
Target Sequence 
CTGATGTTACAGACTCCATGTTGGAAGAAGCATTCAAAACCAGTTATCCTTCAGTTAGAGGAGCCAAAGTTGTTTTTGAC
AAAGTCACTGGGCGATCCAAGGGATATGGTTTTGTACGTTTTGGAGATGAAAATGAGCAAACACGTGCTATGACTGAGAT
GAATGGAGCGACCTTGTCTACAAGGCAAATGAGGCTTGGGCCGGCAGCTAACAAGAAGAATATGGGTACCCAGCAGACAT
ATTCAACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16984.2.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis