Browse Element(s) Details


Os.14708.1.S1_at

Description gb:AK120864.1
DB_XREF= gi:37990487
TID=Os.14708.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.14708 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative Multidrug resistance protein norM (Na(+)drug antiporter) (OSJNBa0036M16.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023025C14, full insert sequence.
FL= gb:AK120864.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3331011/11MATE efflux family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g33270Os.5697.1.S1_at10/117+19885510..19886589expressed protein
LOC_Os07g33280Os.6516.1.S1_at11/117+19897516..19898337expressed protein
LOC_Os07g33290OsAffx.10075.1.S1_at4/117+19902255..19903268hypothetical protein
LOC_Os07g33300OsAffx.5514.2.S1_at11/117+19903331..19907930expressed protein
LOC_Os07g33300Os.28197.1.S2_at11/117+19903331..19907930expressed protein
LOC_Os07g33300Os.28197.1.S1_a_at10/117+19903331..19907930expressed protein
LOC_Os07g33300OsAffx.5514.1.S1_x_at4/117+19903331..19907930expressed protein
LOC_Os07g33310Os.14708.1.S1_at11/117+19909672..19912872MATE efflux family protein, expressed
LOC_Os07g33310Os.14708.2.S1_at5/117+19909672..19912872MATE efflux family protein, expressed
LOC_Os07g33320OsAffx.28727.1.S1_at11/117+19915361..19915690expressed protein
LOC_Os07g33330Os.16984.2.S1_a_at11/117+19918642..19922640RNA Binding Protein 45, putative, expressed
LOC_Os07g33340Os.24708.1.S1_at11/117+19924412..19930300DEAD/DEAH box helicase family protein, expressed
LOC_Os07g33350Os.49631.2.S1_x_at11/117+19933799..19934729Hsp20/alpha crystallin family protein, expressed
LOC_Os07g33360Os.24533.1.S1_x_at11/117+19936793..19941475chromosoma associate protein subunit H2, putative, expressed
LOC_Os07g33360Os.24533.1.S1_at11/117+19936793..19941475chromosoma associate protein subunit H2, putative, expressed
LOC_Os07g33360Os.46297.1.S1_at11/117+19936793..19941475chromosoma associate protein subunit H2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015297molecular_functionantiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14708.1.S1_at--665--6312Chr07:19912479..19912503 (25 bp)
GATGACACAAAGCAGCCTCTTCTTG
LOC_Os07g33310
Os.14708.1.S1_at--703--1511Chr07:19912489..19912513 (25 bp)
AGCAGCCTCTTCTTGTTAACAGACA
LOC_Os07g33310
Os.14708.1.S1_at--245--4751Chr07:19912541..19912565 (25 bp)
GCTGATATATGTATGCGGCTGCAAA
LOC_Os07g33310
Os.14708.1.S1_at--710--6911Chr07:19912551..19912575 (25 bp)
GTATGCGGCTGCAAATTCGTCAGAT
LOC_Os07g33310
Os.14708.1.S1_at--335--5131Chr07:19912561..19912585 (25 bp)
GCAAATTCGTCAGATTGGACGCCAT
LOC_Os07g33310
Os.14708.1.S1_at--949--10851Chr07:19912575..19912599 (25 bp)
TTGGACGCCATCTAACCGCAATGAT
LOC_Os07g33310
Os.14708.1.S1_at--628--9791Chr07:19912587..19912611 (25 bp)
TAACCGCAATGATATGACTGTCCCG
LOC_Os07g33310
Os.14708.1.S1_at--796--7911Chr07:19912615..19912639 (25 bp)
GGTTGGATCAACGACATTCAGTTCA
LOC_Os07g33310
Os.14708.1.S1_at--1106--6731Chr07:19912635..19912659 (25 bp)
GTTCAGTCAGTTTCATGTGGGCTCA
LOC_Os07g33310
Os.14708.1.S1_at--842--5211Chr07:19912811..19912835 (25 bp)
GAATTATTCTCACCTAACGATACTA
LOC_Os07g33310
Os.14708.1.S1_at--561--9811Chr07:19912825..19912849 (25 bp)
TAACGATACTATTTTGAGGCACATA
LOC_Os07g33310
Target Sequence 
GATGACACAAAGCAGCCTCTTCTTGTTAACAGACAGTGATAGTATCAGAAGGAAAAATAGGAGCTGATATATGTATGCGG
CTGCAAATTCGTCAGATTGGACGCCATCTAACCGCAATGATATGACTGTCCCGGACNGGTTGGATCAACGACATTCAGTT
CAGTCAGTTTCATGTGGGCTCATNCTACCACNTTCAGAATTCACATAATGCCATGAATTATTCTTTTTTGGGGAATACGC
AAGGACCGTGTTTTTTAATTAAGAGGAATAAATGTTATTTACGTGCNAAAGCAAAAGCAAAAATGAAGGGGACGGGAAAC
TGGAAAAATACCATGAATTATTCTCACCTAACGATACTATTTTGAGGCACATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14708.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis