Browse Element(s) Details


Os.24533.1.S1_x_at

Description gb:NM_187401.1
DB_XREF= gi:34901887
GEN=OSJNBa0036M16.10
TID=Os.24533.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.24533 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0036M16.10 (OSJNBa0036M16.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0036M16.10 (OSJNBa0036M16.10), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3336011/11chromosoma associate protein subunit H2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g33310Os.14708.1.S1_at11/117+19909672..19912872MATE efflux family protein, expressed
LOC_Os07g33310Os.14708.2.S1_at5/117+19909672..19912872MATE efflux family protein, expressed
LOC_Os07g33320OsAffx.28727.1.S1_at11/117+19915361..19915690expressed protein
LOC_Os07g33330Os.16984.2.S1_a_at11/117+19918642..19922640RNA Binding Protein 45, putative, expressed
LOC_Os07g33340Os.24708.1.S1_at11/117+19924412..19930300DEAD/DEAH box helicase family protein, expressed
LOC_Os07g33350Os.49631.2.S1_x_at11/117+19933799..19934729Hsp20/alpha crystallin family protein, expressed
LOC_Os07g33360Os.24533.1.S1_x_at11/117+19936793..19941475chromosoma associate protein subunit H2, putative, expressed
LOC_Os07g33360Os.24533.1.S1_at11/117+19936793..19941475chromosoma associate protein subunit H2, putative, expressed
LOC_Os07g33360Os.46297.1.S1_at11/117+19936793..19941475chromosoma associate protein subunit H2, putative, expressed
LOC_Os07g33370OsAffx.22295.2.S1_at11/117+19942549..19949361IQ calmodulin-binding motif family protein, expressed
LOC_Os07g33370OsAffx.22295.2.S1_x_at11/117+19942549..19949361IQ calmodulin-binding motif family protein, expressed
LOC_Os07g33370OsAffx.22295.1.S1_at7/117+19942549..19949361IQ calmodulin-binding motif family protein, expressed
LOC_Os07g33380OsAffx.28728.1.S1_at11/117+19955539..19956483hypothetical protein
LOC_Os07g33390Os.47752.1.S1_at9/117+19960426..19962128ATPase, AAA family protein, expressed
LOC_Os07g33390OsAffx.20433.1.S1_x_at2/117+19960426..19962128ATPase, AAA family protein, expressed
LOC_Os07g33400Os.23959.1.A1_x_at10/117+19963975..19968222hypothetical protein
LOC_Os07g33400Os.23959.1.A1_at5/117+19963975..19968222hypothetical protein
LOC_Os07g33400Os.55693.1.S1_at1/117+19963975..19968222hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24533.1.S1_x_at--88--2371Chr07:19940124..19940148 (25 bp)
AAAGCCTTGAAGATTTGTGTCGGTC
LOC_Os07g33360
Os.24533.1.S1_x_at--137--7831Chr07:19940145..19940612 (25 bp)
GGTCACATCTGGATAGAAACCCACC
LOC_Os07g33360
Os.24533.1.S1_x_at--1028--411Chr07:19940641..19940665 (25 bp)
ATCATCGACACGCTCTCATCAAGAA
LOC_Os07g33360
Os.24533.1.S1_x_at--618--7911Chr07:19940724..19940748 (25 bp)
GGTTGCAAGGACATTCTCTGCGCTT
LOC_Os07g33360
Os.24533.1.S1_x_at--41--811Chr07:19940868..19940892 (25 bp)
ATGGGTTGGTATGTCACACGGCTTC
LOC_Os07g33360
Os.24533.1.S1_x_at--704--751Chr07:19940904..19940928 (25 bp)
ATGTAAGGCTCATTGGTCCCAACCA
LOC_Os07g33360
Os.24533.1.S1_x_at--932--2271Chr07:19940937..19940961 (25 bp)
AAATCGAGGCACGTTTCGCGCGAAA
LOC_Os07g33360
Os.24533.1.S1_x_at--247--2331Chr07:19940959..19940983 (25 bp)
AAAGAGGGTCAATTCGCCTTCACGA
LOC_Os07g33360
Os.24533.1.S1_x_at--88--9851Chr07:19940986..19941010 (25 bp)
TAAAGGCAGTGGCAAACCCTCTCCA
LOC_Os07g33360
Os.24533.1.S1_x_at--444--1651Chr07:19941010..19941034 (25 bp)
AGCGCAACAGAAGTCGCCTAAGAAA
LOC_Os07g33360
Os.24533.1.S1_x_at--33--7811Chr07:19941319..19941343 (25 bp)
GGTCTGTTGCTAGAATTGCCCTTAT
LOC_Os07g33360
Target Sequence 
AAAGCCTTGAAGATTTGTGTCGGTCACATCTGGATAGAAACCCACCTTTTGATATTGGTTCTTATGGAGAGCAAATCATC
GACACGCTCTCATCAAGAACCGAGAATGCAGGGATTGCATCATTCAGTGAGATTGTTAGTGGCAAGCCAAAGTATGAGGT
TGCAAGGACATTCTCTGCGCTTCTCCAGCTGGTGAACGGTAGAAGTGTTGATCTGGACAAAGGACAAACTACGAATGGGT
TGGTATGTCACACGGCTTCCAACCCATTCCATGTAAGGCTCATTGGTCCCAACCAGAGACCGGAAATCGAGGCACGTTTC
GCGCGAAAGAGGGTCAATTCGCCTTCACGAAATAAAGGCAGTGGCAAACCCTCTCCAGCGCAACAGAAGTCGCCTAAGAA
ACATGGGCATAAAAATGGCAAGGTTCCAGTGAAGACGTCAATTAAACTGACTCCAGATGGAAAGCGAAGGCGGAGGTCTG
TTGCTAGAATTGCCCTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24533.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis