Browse Element(s) Details


Os.49631.2.S1_x_at

Description gb:AK099296.1
DB_XREF= gi:32984505
TID=Os.49631.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49631 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023138P10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023138P10, full insert sequence.
FL= gb:AK071773.1 gb:AK099296.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3335011/11Hsp20/alpha crystallin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g33310Os.14708.1.S1_at11/117+19909672..19912872MATE efflux family protein, expressed
LOC_Os07g33310Os.14708.2.S1_at5/117+19909672..19912872MATE efflux family protein, expressed
LOC_Os07g33320OsAffx.28727.1.S1_at11/117+19915361..19915690expressed protein
LOC_Os07g33330Os.16984.2.S1_a_at11/117+19918642..19922640RNA Binding Protein 45, putative, expressed
LOC_Os07g33340Os.24708.1.S1_at11/117+19924412..19930300DEAD/DEAH box helicase family protein, expressed
LOC_Os07g33350Os.49631.2.S1_x_at11/117+19933799..19934729Hsp20/alpha crystallin family protein, expressed
LOC_Os07g33360Os.24533.1.S1_x_at11/117+19936793..19941475chromosoma associate protein subunit H2, putative, expressed
LOC_Os07g33360Os.24533.1.S1_at11/117+19936793..19941475chromosoma associate protein subunit H2, putative, expressed
LOC_Os07g33360Os.46297.1.S1_at11/117+19936793..19941475chromosoma associate protein subunit H2, putative, expressed
LOC_Os07g33370OsAffx.22295.2.S1_at11/117+19942549..19949361IQ calmodulin-binding motif family protein, expressed
LOC_Os07g33370OsAffx.22295.2.S1_x_at11/117+19942549..19949361IQ calmodulin-binding motif family protein, expressed
LOC_Os07g33370OsAffx.22295.1.S1_at7/117+19942549..19949361IQ calmodulin-binding motif family protein, expressed
LOC_Os07g33380OsAffx.28728.1.S1_at11/117+19955539..19956483hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006979biological_processresponse to oxidative stress
GO:0009408biological_processresponse to heat
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49631.2.S1_x_at--773--8531Chr07:19934218..19934242 (25 bp)
TGGAGGACGCGATGTACCTCGTCAT
LOC_Os07g33350
Os.49631.2.S1_x_at--805--1551Chr07:19934301..19934325 (25 bp)
AGCTTCGCGAGGAAGTTCCGGCTGC
LOC_Os07g33350
Os.49631.2.S1_x_at--236--9851Chr07:19934361..19934385 (25 bp)
TACACCCACGGCGTGCTCAGGGTAA
LOC_Os07g33350
Os.49631.2.S1_x_at--292--7831Chr07:19934381..19934405 (25 bp)
GGTAACCGTCCCGAGGCTGCATACG
LOC_Os07g33350
Os.49631.2.S1_x_at--79--5951Chr07:19934479..19934503 (25 bp)
GAGCAGCCTGATTAGTGATTCGATA
LOC_Os07g33350
Os.49631.2.S1_x_at--49--1231Chr07:19934536..19934560 (25 bp)
AGTTGCACTGTGAGCTTAGGATTGG
LOC_Os07g33350
Os.49631.2.S1_x_at--77--7371Chr07:19934579..19934603 (25 bp)
GTGAACTGTACAATTCTCAGGCATT
LOC_Os07g33350
Os.49631.2.S1_x_at--604--3171Chr07:19934626..19934650 (25 bp)
AATTGGCAGTGCCTGTTCGTTATCT
LOC_Os07g33350
Os.49631.2.S1_x_at--41--7291Chr07:19934634..19934658 (25 bp)
GTGCCTGTTCGTTATCTTGTAGTAT
LOC_Os07g33350
Os.49631.2.S1_x_at--1088--6891Chr07:19934655..19934679 (25 bp)
GTATCAGTTGTTTTTTGTGCTATAG
LOC_Os07g33350
Os.49631.2.S1_x_at--694--1171Chr07:19934678..19934702 (25 bp)
AGTACTCTATTTCTGTTCTGTCGCA
LOC_Os07g33350
Target Sequence 
TGGAGGACGCGATGTACCTCGTCATCCGCACCGAGCTTGATGACGGTGGCGATGGCGACGGCGGAGGCGGCGGTGGCCGG
AGGAGCTTCGCGAGGAAGTTCCGGCTGCCGGCGATGGTGGACGCCGACGGCATCTCGGCGGAGTACACCCACGGCGTGCT
CAGGGTAACCGTCCCGAGGCTGCATACGCGGGCTCGCCCCGTCGTCAACCTCGCCGGCGGCGGCGGCGGTGGCGGTGGCC
CGGCCTGCGACCCCGTCGCCNGAGCAGCCTGATTAGTGATTCGATATCAATCAAGAAAATTACTTAATTACTTATTTAAG
TTGCACTGTGAGCTTAGGATTGGGGAAGTAATAGCAGTATAGTGAACTGTACAATTCTCAGGCATTTCAGAATTTCAGAA
AATTGCCAAATTGGCAGTGCCTGTTCGTTATCTTGTAGTATCAGTTGTTTTTTGTGCTATAGTACTCTATTTCTGTTCTG
TCGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49631.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis