Browse Element(s) Details


Os.46297.1.S1_at

Description gb:AK121812.1
DB_XREF= gi:37991435
TID=Os.46297.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.46297 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033098C24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033098C24, full insert sequence.
FL= gb:AK121812.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3336011/11chromosoma associate protein subunit H2, putative, expressed
LOC_Os04g195901/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g33310Os.14708.1.S1_at11/117+19909672..19912872MATE efflux family protein, expressed
LOC_Os07g33310Os.14708.2.S1_at5/117+19909672..19912872MATE efflux family protein, expressed
LOC_Os07g33320OsAffx.28727.1.S1_at11/117+19915361..19915690expressed protein
LOC_Os07g33330Os.16984.2.S1_a_at11/117+19918642..19922640RNA Binding Protein 45, putative, expressed
LOC_Os07g33340Os.24708.1.S1_at11/117+19924412..19930300DEAD/DEAH box helicase family protein, expressed
LOC_Os07g33350Os.49631.2.S1_x_at11/117+19933799..19934729Hsp20/alpha crystallin family protein, expressed
LOC_Os07g33360Os.24533.1.S1_x_at11/117+19936793..19941475chromosoma associate protein subunit H2, putative, expressed
LOC_Os07g33360Os.24533.1.S1_at11/117+19936793..19941475chromosoma associate protein subunit H2, putative, expressed
LOC_Os07g33360Os.46297.1.S1_at11/117+19936793..19941475chromosoma associate protein subunit H2, putative, expressed
LOC_Os07g33370OsAffx.22295.2.S1_at11/117+19942549..19949361IQ calmodulin-binding motif family protein, expressed
LOC_Os07g33370OsAffx.22295.2.S1_x_at11/117+19942549..19949361IQ calmodulin-binding motif family protein, expressed
LOC_Os07g33370OsAffx.22295.1.S1_at7/117+19942549..19949361IQ calmodulin-binding motif family protein, expressed
LOC_Os07g33380OsAffx.28728.1.S1_at11/117+19955539..19956483hypothetical protein
LOC_Os07g33390Os.47752.1.S1_at9/117+19960426..19962128ATPase, AAA family protein, expressed
LOC_Os07g33390OsAffx.20433.1.S1_x_at2/117+19960426..19962128ATPase, AAA family protein, expressed
LOC_Os07g33400Os.23959.1.A1_x_at10/117+19963975..19968222hypothetical protein
LOC_Os07g33400Os.23959.1.A1_at5/117+19963975..19968222hypothetical protein
LOC_Os07g33400Os.55693.1.S1_at1/117+19963975..19968222hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46297.1.S1_at--356--631Chr07:19941119..19941143 (25 bp)
ATGCTGCGCCCGATCAATCTAGAAT
LOC_Os07g33360
Os.46297.1.S1_at--1109--6111Chr07:19941160..19941184 (25 bp)
GAGGGCAGACTGACTCATGAGCATA
LOC_Os07g33360
Os.46297.1.S1_at--847--151Chr07:19941188..19941212 (25 bp)
ATTATGATTCTCTTCTTCCTGTAAC
LOC_Os07g33360
Os.46297.1.S1_at--937--3631Chr07:19941202..19941226 (25 bp)
CTTCCTGTAACTTGAGTGTTGTCTA
LOC_Os07g33360
Os.46297.1.S1_at--973--10111Chr07:19941239..19941263 (25 bp)
TATGACATAGGCCTAGCTAGATGGG
LOC_Os07g33360
Os.46297.1.S1_at--1121--1271Chr07:19941279..19941303 (25 bp)
AGATCGTTGTATTGTGCTTGCCTGT
LOC_Os07g33360
Os.46297.1.S1_at--534--751Chr07:19941304..19941328 (25 bp)
ATGTAATGTTATCTAGGTCTGTTGC
LOC_Os07g33360
Os.46297.1.S1_at--110--1271Chr07:19941385..19941409 (25 bp)
AGATTTCTTTCGTTCTACTTCAATA
LOC_Os07g33360
Os.46297.1.S1_at--816--3711Chr07:19941416..19941440 (25 bp)
CTACCATCTGGTTAGCCTATTGTTT
LOC_Os07g33360
Os.46297.1.S1_at--25--7032Chr07:19941442..19941466 (25 bp)
GTACATGAGATATTCCTGTGCCTTT
LOC_Os07g33360
Os.46297.1.S1_at--366--231Chr07:19941451..19941475 (25 bp)
ATATTCCTGTGCCTTTTGAGTTTTG
LOC_Os07g33360
Target Sequence 
ATGCTGCGCCCGATCAATCTAGAATNCAGCTGATGAAGATGGAGGGCAGACTGACTCATGAGCATAACAATTATGATTCT
CTTCTTCCTGTAACTTGAGTGTTGTCTAGCAACTATGAGTTATGACATAGGCCTAGCTAGATGGGGTGTACATGTACAAT
AGATCGTTGTATTGTGCTTGCCTGTATGTAATGTTATCTAGGTCTGTTGCTAGAATTGCCCTTATATGTCATGTCTGTAA
GGGGGACATAGGCAAATACAGCTGATAGATTTCTTTCGTTCTACTTCAATAACCAAACTACCATCTGGTTAGCCTATTGT
TTTGTACATGAGATATTCCTGTGCCTTTTGAGTTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46297.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis