Browse Element(s) Details


Os.23959.1.A1_at

Description gb:CA760945
DB_XREF= gi:25804984
DB_XREF=BR060009A10E04.ab1
CLONE=BR060009A10E04.ab1
TID=Os.23959.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.23959 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0036M16.17 (OSJNBa0036M16.17), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g334005/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g33360Os.24533.1.S1_x_at11/117+19936793..19941475chromosoma associate protein subunit H2, putative, expressed
LOC_Os07g33360Os.24533.1.S1_at11/117+19936793..19941475chromosoma associate protein subunit H2, putative, expressed
LOC_Os07g33360Os.46297.1.S1_at11/117+19936793..19941475chromosoma associate protein subunit H2, putative, expressed
LOC_Os07g33370OsAffx.22295.2.S1_at11/117+19942549..19949361IQ calmodulin-binding motif family protein, expressed
LOC_Os07g33370OsAffx.22295.2.S1_x_at11/117+19942549..19949361IQ calmodulin-binding motif family protein, expressed
LOC_Os07g33370OsAffx.22295.1.S1_at7/117+19942549..19949361IQ calmodulin-binding motif family protein, expressed
LOC_Os07g33380OsAffx.28728.1.S1_at11/117+19955539..19956483hypothetical protein
LOC_Os07g33390Os.47752.1.S1_at9/117+19960426..19962128ATPase, AAA family protein, expressed
LOC_Os07g33390OsAffx.20433.1.S1_x_at2/117+19960426..19962128ATPase, AAA family protein, expressed
LOC_Os07g33400Os.23959.1.A1_x_at10/117+19963975..19968222hypothetical protein
LOC_Os07g33400Os.23959.1.A1_at5/117+19963975..19968222hypothetical protein
LOC_Os07g33400Os.55693.1.S1_at1/117+19963975..19968222hypothetical protein
LOC_Os07g33410OsAffx.1381.2.A1_at6/117+19968831..19972476ATPase, AAA family protein
LOC_Os07g33410OsAffx.20433.1.S1_x_at1/117+19968831..19972476ATPase, AAA family protein
LOC_Os07g33420Os.32947.2.S1_at11/117+19975950..19977736Cytochrome P450 family protein
LOC_Os07g33430NANA7+19978918..19979710hypothetical protein
LOC_Os07g33440Os.26830.1.S1_at11/117+19984018..19985974Cytochrome P450 family protein, expressed
LOC_Os07g33440Os.20627.3.S1_x_at2/117+19984018..19985974Cytochrome P450 family protein, expressed
LOC_Os07g33450NANA7+19987442..19994662retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23959.1.A1_at--684--8131Chr07:19964991..19965015 (25 bp)
GGACAGGGTAGTTCCCTTGGGCAAG
LOC_Os07g33400
Os.23959.1.A1_at--939--3451Chr07:19964994..19965018 (25 bp)
CAGGGTAGTTCCCTTGGGCAAGGAG
LOC_Os07g33400
Os.23959.1.A1_at--455--4951Chr07:19965066..19965090 (25 bp)
GCATTTGGTGGATAACCCCAGACAG
LOC_Os07g33400
Os.23959.1.A1_at--506--211Chr07:19965068..19965092 (25 bp)
ATTTGGTGGATAACCCCAGACAGGT
LOC_Os07g33400
Os.23959.1.A1_at--251--2291NONE
AAATGAGCAGAATTTTCGAACCCCT
NONE
Os.23959.1.A1_at--1048--2991NONE
AATGAGCAGAATTTTCGAACCCCTG
NONE
Os.23959.1.A1_at--715--5931NONE
GAGCAGAATTTTCGAACCCCTGCCT
NONE
Os.23959.1.A1_at--367--5031NONE
GCAGAATTTTCGAACCCCTGCCTTG
NONE
Os.23959.1.A1_at--848--2611Chr07:19965079..19965393 (25 bp)
AACCCCTGCCTTGCCTGTGATTAAA
LOC_Os07g33400
Os.23959.1.A1_at--207--4211NONE
CCCCTGCCTTGCCTGTGATTAAATC
NONE
Os.23959.1.A1_at--930--5291NONE
GAAGTGATACTAGAAAATGATTTAT
NONE
Target Sequence 
GGACAGGGTAGTTCCCTTGGGCAAGGAGCTCGAACGAGTCCTTCGAGCCCCGCTGCGCGANGGCAGTGTACTGATGCATT
TGGTGGATAACCCCAGACAGGTGTTTGTGTTAGCTGTCCGCGACGGCTACGCGTATTTAGCANCATNTCCGATGTTCCAT
GATCCCCAANCTCCTTGTTGGTTCCTGTCCCTATGTTTGGAAACGATGAAACTGGAAAGGCTGTTTCGCAGGACATTTGA
CAATCTTGTTCAGCCGTACANCATGGCATGGCCTCCTTNTTTAGTCGGTAACTATGGGAGGTTTGCAGTTGAAGATGCTC
CATGAAATGCAGTACTCCTTGGTCATTGGGCATGGGAAGAAAATGAGCAGAATTTTCGAACCCCTGCCTTGCCTGTGATT
AAATCGAAATGCTGAAGTGATACTAGAAAATGATTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23959.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis