Browse Element(s) Details


Os.14708.2.S1_at

Description gb:NM_187397.1
DB_XREF= gi:34901879
GEN=OSJNBa0036M16.6
TID=Os.14708.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.14708 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative Multidrug resistance protein norM (Na(+)drug antiporter) (OSJNBa0036M16.6), mRNA.
PROD=putative Multidrug resistance protein norM(Na(+)drug antiporter)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g333105/11MATE efflux family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g33270Os.5697.1.S1_at10/117+19885510..19886589expressed protein
LOC_Os07g33280Os.6516.1.S1_at11/117+19897516..19898337expressed protein
LOC_Os07g33290OsAffx.10075.1.S1_at4/117+19902255..19903268hypothetical protein
LOC_Os07g33300OsAffx.5514.2.S1_at11/117+19903331..19907930expressed protein
LOC_Os07g33300Os.28197.1.S2_at11/117+19903331..19907930expressed protein
LOC_Os07g33300Os.28197.1.S1_a_at10/117+19903331..19907930expressed protein
LOC_Os07g33300OsAffx.5514.1.S1_x_at4/117+19903331..19907930expressed protein
LOC_Os07g33310Os.14708.1.S1_at11/117+19909672..19912872MATE efflux family protein, expressed
LOC_Os07g33310Os.14708.2.S1_at5/117+19909672..19912872MATE efflux family protein, expressed
LOC_Os07g33320OsAffx.28727.1.S1_at11/117+19915361..19915690expressed protein
LOC_Os07g33330Os.16984.2.S1_a_at11/117+19918642..19922640RNA Binding Protein 45, putative, expressed
LOC_Os07g33340Os.24708.1.S1_at11/117+19924412..19930300DEAD/DEAH box helicase family protein, expressed
LOC_Os07g33350Os.49631.2.S1_x_at11/117+19933799..19934729Hsp20/alpha crystallin family protein, expressed
LOC_Os07g33360Os.24533.1.S1_x_at11/117+19936793..19941475chromosoma associate protein subunit H2, putative, expressed
LOC_Os07g33360Os.24533.1.S1_at11/117+19936793..19941475chromosoma associate protein subunit H2, putative, expressed
LOC_Os07g33360Os.46297.1.S1_at11/117+19936793..19941475chromosoma associate protein subunit H2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015297molecular_functionantiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14708.2.S1_at--1029--2891Chr07:19911904..19911928 (25 bp)
AAGGTGCTATTAATTCTCGACATAC
LOC_Os07g33310
Os.14708.2.S1_at--489--91Chr07:19911916..19911940 (25 bp)
ATTCTCGACATACCGCAATTTGACA
LOC_Os07g33310
Os.14708.2.S1_at--269--5671Chr07:19911922..19911946 (25 bp)
GACATACCGCAATTTGACACACATT
LOC_Os07g33310
Os.14708.2.S1_at--405--5631Chr07:19911937..19911961 (25 bp)
GACACACATTCAGTTGACTTTTCAG
LOC_Os07g33310
Os.14708.2.S1_at--550--9651Chr07:19911946..19911970 (25 bp)
TCAGTTGACTTTTCAGTTGTAGAGT
LOC_Os07g33310
Os.14708.2.S1_at--1114--5491NONE
GAACAAGGAGGTACCGTAACAGCAT
NONE
Os.14708.2.S1_at--472--8011Chr07:19912969..19912991 (23 bp)
GGAGGTACCGTAACAGCATTTCCCT
NONE
Os.14708.2.S1_at--108--9971Chr07:19912972..19912996 (25 bp)
TACCGTAACAGCATTTCCCTGCAGA
NONE
Os.14708.2.S1_at--643--191Chr07:19912984..19913008 (25 bp)
ATTTCCCTGCAGAGCTGTTGAGAAC
NONE
Os.14708.2.S1_at--86--5491Chr07:19913005..19913029 (25 bp)
GAACACAAATTCTTCAAAGGGCAGG
NONE
Os.14708.2.S1_at--608--7591Chr07:19913023..19913047 (25 bp)
GGGCAGGAGGCAACAATCGAAAAGA
NONE
Target Sequence 
AAGGTGCTATTAATTCTCGACATACCGCAATTTGACACACATTCAGTTGACTTTTCAGTTGTAGAGTCAACTGGAAAAGG
GATTGTGGGGAGGCATGATTGGAGGGACGCTCATCCAAACACTTATTTTAATATGGATCACATTCAGAACAGATTGGAAC
AAGGAGGTACCGTAACAGCATTTCCCTGCAGAGCTGTTGAGAACACAAATTCTTCAAAGGGCAGGAGGCAACAATCGAAA
AGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14708.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis