Browse Element(s) Details


OsAffx.5514.2.S1_at

Description tigr:9635.m03279
TID=OsAffx.5514.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3330011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g33270Os.5697.1.S1_at10/117+19885510..19886589expressed protein
LOC_Os07g33280Os.6516.1.S1_at11/117+19897516..19898337expressed protein
LOC_Os07g33290OsAffx.10075.1.S1_at4/117+19902255..19903268hypothetical protein
LOC_Os07g33300OsAffx.5514.2.S1_at11/117+19903331..19907930expressed protein
LOC_Os07g33300Os.28197.1.S2_at11/117+19903331..19907930expressed protein
LOC_Os07g33300Os.28197.1.S1_a_at10/117+19903331..19907930expressed protein
LOC_Os07g33300OsAffx.5514.1.S1_x_at4/117+19903331..19907930expressed protein
LOC_Os07g33310Os.14708.1.S1_at11/117+19909672..19912872MATE efflux family protein, expressed
LOC_Os07g33310Os.14708.2.S1_at5/117+19909672..19912872MATE efflux family protein, expressed
LOC_Os07g33320OsAffx.28727.1.S1_at11/117+19915361..19915690expressed protein
LOC_Os07g33330Os.16984.2.S1_a_at11/117+19918642..19922640RNA Binding Protein 45, putative, expressed
LOC_Os07g33340Os.24708.1.S1_at11/117+19924412..19930300DEAD/DEAH box helicase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5514.2.S1_at--471--10014Chr09:12402325..12402349 (25 bp)
TAGCTCAAGTAAATTGCCCCTCACT
NONE
OsAffx.5514.2.S1_at--882--3774Chr12:4995361..4995385 (25 bp)
CTCTCCATCTCTTAATTCTTTTTGC
NONE
OsAffx.5514.2.S1_at--350--6754Chr12:4995207..4995231 (25 bp)
GTTCATGAGCTCAATCTTGTTTGTG
NONE
OsAffx.5514.2.S1_at--514--7934Chr12:4995112..4995136 (25 bp)
GGATGTTATGTTATGGCCGGGATTA
NONE
OsAffx.5514.2.S1_at--794--7876Chr12:4995093..4995117 (25 bp)
GGATTAATTCCCATACTTTGCCCTG
NONE
OsAffx.5514.2.S1_at--235--9895Chr12:4995080..4995104 (25 bp)
TACTTTGCCCTGCAAGGTTGGATGA
NONE
OsAffx.5514.2.S1_at--874--2794Chr09:12401989..12402013 (25 bp)
AAGATGTTGGTTTACCTCTTCTCAT
NONE
OsAffx.5514.2.S1_at--288--6834Chr09:12401980..12402004 (25 bp)
GTTTACCTCTTCTCATGTTGTGATT
NONE
OsAffx.5514.2.S1_at--46--8692Chr12:4995027..4995051 (25 bp)
TGTGATTTGCTACTTTGCCCTCTAA
NONE
OsAffx.5514.2.S1_at--304--4193Chr09:12401945..12401969 (25 bp)
CCCTCTAATCGCCATGTGCAAGATG
NONE
OsAffx.5514.2.S1_at--254--5013Chr12:4994965..4994989 (25 bp)
GCATGGATATGATAGGCACCTGAAT
NONE
Target Sequence 
TAGCTCAAGTAAATTGCCCCTCACTCCCTCTCTCCATCTCTTAATTCTTTTTGCAATCATATGTGGACAATGTATTATAT
TTAGGTGATTAATGAGTACAGGAGTTCTAGCAAATGAATATTAATCCTAGTGATATGCTTTGTAGGTGTTGCTGCTGCAT
CTGTTTATTCTTAAAGAACTATAGTTCATGAGCTCAATCTTGTTTGTGTAAATAATAGGAAATATGCATGGTATGTTATG
AATTACTATGAAACTGGTTCTTATATTTTGATGGCAATGGATGTTATGTTATGGCCGGGATTAATTCCCATACTTTGCCC
TGCAAGGTTGGATGAAAAGATGTTGGTTTACCTCTTCTCATGTTGTGATTTGCTACTTTGCCCTCTAATCGCCATGTGCA
AGATGATGTCTAACATGACTTTGTAGCATGGATATGATAGGCACCTGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5514.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis