Browse Element(s) Details


Os.5697.1.S1_at

Description gb:AK102726.1
DB_XREF= gi:32987935
TID=Os.5697.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5697 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033105M03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033105M03, full insert sequence.
FL= gb:AK069570.1 gb:AK102726.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3327010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g33240Os.13599.1.S1_at11/117+19859915..19862826expressed protein
LOC_Os07g33250NANA7+19867227..19870498retrotransposon protein, putative, unclassified
LOC_Os07g33260NANA7+19871140..19877295transposon protein, putative, unclassified
LOC_Os07g33270Os.5697.1.S1_at10/117+19885510..19886589expressed protein
LOC_Os07g33280Os.6516.1.S1_at11/117+19897516..19898337expressed protein
LOC_Os07g33290OsAffx.10075.1.S1_at4/117+19902255..19903268hypothetical protein
LOC_Os07g33300OsAffx.5514.2.S1_at11/117+19903331..19907930expressed protein
LOC_Os07g33300Os.28197.1.S2_at11/117+19903331..19907930expressed protein
LOC_Os07g33300Os.28197.1.S1_a_at10/117+19903331..19907930expressed protein
LOC_Os07g33300OsAffx.5514.1.S1_x_at4/117+19903331..19907930expressed protein
LOC_Os07g33310Os.14708.1.S1_at11/117+19909672..19912872MATE efflux family protein, expressed
LOC_Os07g33310Os.14708.2.S1_at5/117+19909672..19912872MATE efflux family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5697.1.S1_at--725--7171Chr07:19885857..19885881 (25 bp)
GTCTGGAGCCGAACCGGCTTCGACG
LOC_Os07g33270
Os.5697.1.S1_at--234--8291Chr07:19885842..19885866 (25 bp)
GGCTTCGACGGCTGAGCCAGATTAA
LOC_Os07g33270
Os.5697.1.S1_at--32--7611Chr07:19885813..19885837 (25 bp)
GGGAGACAAGCCAATTAGGATTTAA
LOC_Os07g33270
Os.5697.1.S1_at--196--9491Chr07:19885761..19885785 (25 bp)
TCTCCTAATTTTCTTCCTCTTAAAT
LOC_Os07g33270
Os.5697.1.S1_at--106--831Chr07:19885714..19885738 (25 bp)
ATGGTTTAAATTTTGCTCTCTCGTT
LOC_Os07g33270
Os.5697.1.S1_at--105--10731Chr07:19885702..19885726 (25 bp)
TTGCTCTCTCGTTTTATCTTCTCAT
LOC_Os07g33270
Os.5697.1.S1_at--1143--2411Chr07:19885657..19885681 (25 bp)
AAAAGCGTGTGGTATGTAGCATAGT
LOC_Os07g33270
Os.5697.1.S1_at--235--1551Chr07:19885640..19885664 (25 bp)
AGCATAGTGCATTGGTTGAATAATC
LOC_Os07g33270
Os.5697.1.S1_at--588--8571Chr07:19885628..19885652 (25 bp)
TGGTTGAATAATCTTCTTCTTTCTC
LOC_Os07g33270
Os.5697.1.S1_at--70--8651Chr07:19885578..19885602 (25 bp)
TGGGCAGCTTCAACCAAAGATGGTT
LOC_Os07g33270
Os.5697.1.S1_at--1049--3751NONE
CTCTACTATAATATGTATGGCCTAA
NONE
Target Sequence 
GTCTGGAGCCGAACCGGCTTCGACGGCTGAGCCAGATTAAACCGGGGAGACAAGCCAATTAGGATTTAATTTCTTCTCTT
CTTCGATTTTTCCCCCTCTCCTAATTTTCTTCCTCTTAAATTTTTGTGAAAAAATTTTGTAATATGGTTTAAATTTTGCT
CTCTCGTTTTATCTTCTCATCAAGTTAATGAGAAAAGAGGAAAAGCGTGTGGTATGTAGCATAGTGCATTGGTTGAATAA
TCTTCTTCTTTCTCTCTTTCTTGTTGATTGGGTGGTGGTTGGGCAGCTTCAACCAAAGATGGTTGGAATCTGATTATTAT
TCTTTTGTTAATTACTCTACTATAATATGTATGGCCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5697.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis