Browse Element(s) Details


OsAffx.10075.1.S1_at

Description gb:NM_187395.1
DB_XREF= gi:34901875
GEN=OSJNBa0036M16.4
TID=OsAffx.10075.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0036M16.4 (OSJNBa0036M16.4), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g332904/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g33260NANA7+19871140..19877295transposon protein, putative, unclassified
LOC_Os07g33270Os.5697.1.S1_at10/117+19885510..19886589expressed protein
LOC_Os07g33280Os.6516.1.S1_at11/117+19897516..19898337expressed protein
LOC_Os07g33290OsAffx.10075.1.S1_at4/117+19902255..19903268hypothetical protein
LOC_Os07g33300OsAffx.5514.2.S1_at11/117+19903331..19907930expressed protein
LOC_Os07g33300Os.28197.1.S2_at11/117+19903331..19907930expressed protein
LOC_Os07g33300Os.28197.1.S1_a_at10/117+19903331..19907930expressed protein
LOC_Os07g33300OsAffx.5514.1.S1_x_at4/117+19903331..19907930expressed protein
LOC_Os07g33310Os.14708.1.S1_at11/117+19909672..19912872MATE efflux family protein, expressed
LOC_Os07g33310Os.14708.2.S1_at5/117+19909672..19912872MATE efflux family protein, expressed
LOC_Os07g33320OsAffx.28727.1.S1_at11/117+19915361..19915690expressed protein
LOC_Os07g33330Os.16984.2.S1_a_at11/117+19918642..19922640RNA Binding Protein 45, putative, expressed
LOC_Os07g33340Os.24708.1.S1_at11/117+19924412..19930300DEAD/DEAH box helicase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10075.1.S1_at--936--411Chr07:19902200..19902224 (25 bp)
ATCATGCCTGTGCTCCAGCGATGGC
NONE
OsAffx.10075.1.S1_at--498--871Chr07:19902232..19902256 (25 bp)
ATGGCGGGAGTGAATCTGAAGACAT
NONE
OsAffx.10075.1.S1_at--69--3052Chr07:19902244..19902268 (25 bp)
AATCTGAAGACATGGCCACCGGCGG
NONE
OsAffx.10075.1.S1_at--1129--2751Chr07:19902250..19902274 (25 bp)
AAGACATGGCCACCGGCGGAGACCT
NONE
OsAffx.10075.1.S1_at--406--4691Chr07:19902265..19902289 (25 bp)
GCGGAGACCTGATGCGGATGCAGCT
LOC_Os07g33290
OsAffx.10075.1.S1_at--156--7991Chr07:19902280..19902304 (25 bp)
GGATGCAGCTGTTCCTAGCCGAGGT
LOC_Os07g33290
OsAffx.10075.1.S1_at--381--9991Chr07:19902295..19902319 (25 bp)
TAGCCGAGGTCGTCCATCTCGTGCT
LOC_Os07g33290
OsAffx.10075.1.S1_at--696--8591Chr07:19902355..19902379 (25 bp)
TGGTCGCTAGCGCTGGAGTTGAAGA
LOC_Os07g33290
OsAffx.10075.1.S1_at--228--6051Chr07:19903802..19903826 (25 bp)
GAGATTGTGGTTGTTCTACTGGCAC
NONE
OsAffx.10075.1.S1_at--1095--10831Chr07:19903806..19903830 (25 bp)
TTGTGGTTGTTCTACTGGCACATCT
NONE
OsAffx.10075.1.S1_at--709--1951Chr07:19903819..19903843 (25 bp)
ACTGGCACATCTGGCAGTAGTGGTT
NONE
Target Sequence 
ATCATGCCTGTGCTCCAGCGATGGCGATGGTGATGGCGGGAGTGAATCTGAAGACATGGCCACCGGCGGAGACCTGATGC
GGATGCAGCTGTTCCTAGCCGAGGTCGTCCATCTCGTGCTGCTGCTCGTCTGGGGACGACGGCCGGAGTTGAGGGTGGTC
GCTAGCGCTGGAGTTGAAGAAGAAGACGGAGNNNNNNNNNNNNTTGNNNNNNANNTNNNTGNATNAAGGAATCCTCTTGA
GATTGTGGTTGTTCTACTGGCACATCTGGCAGTAGTGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10075.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis