Browse Element(s) Details


Os.28197.1.S1_a_at

Description gb:AK061672.1
DB_XREF= gi:32971690
TID=Os.28197.1
CNT=37
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.28197 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0036M16.5 (OSJNBa0036M16.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-036-G08, full insert sequence.
FL= gb:AK119429.1 gb:AK061672.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3330010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g33270Os.5697.1.S1_at10/117+19885510..19886589expressed protein
LOC_Os07g33280Os.6516.1.S1_at11/117+19897516..19898337expressed protein
LOC_Os07g33290OsAffx.10075.1.S1_at4/117+19902255..19903268hypothetical protein
LOC_Os07g33300OsAffx.5514.2.S1_at11/117+19903331..19907930expressed protein
LOC_Os07g33300Os.28197.1.S2_at11/117+19903331..19907930expressed protein
LOC_Os07g33300Os.28197.1.S1_a_at10/117+19903331..19907930expressed protein
LOC_Os07g33300OsAffx.5514.1.S1_x_at4/117+19903331..19907930expressed protein
LOC_Os07g33310Os.14708.1.S1_at11/117+19909672..19912872MATE efflux family protein, expressed
LOC_Os07g33310Os.14708.2.S1_at5/117+19909672..19912872MATE efflux family protein, expressed
LOC_Os07g33320OsAffx.28727.1.S1_at11/117+19915361..19915690expressed protein
LOC_Os07g33330Os.16984.2.S1_a_at11/117+19918642..19922640RNA Binding Protein 45, putative, expressed
LOC_Os07g33340Os.24708.1.S1_at11/117+19924412..19930300DEAD/DEAH box helicase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28197.1.S1_a_at--834--7891NONE
GGTTCTAGCTCAAGTCCAAATGCAT
NONE
Os.28197.1.S1_a_at--952--5616Chr12:19548631..19548650 (20 bp)
GACAGGTTTTGGTGTAATCCATTCT
NONE
Os.28197.1.S1_a_at--235--7752Chr09:12401725..12401749 (25 bp)
GGTGTAATCCATTCTCAGGTTGTGT
NONE
Os.28197.1.S1_a_at--3--3492Chr09:12401710..12401734 (25 bp)
CAGGTTGTGTTTTTCCTCATTGCAA
NONE
Os.28197.1.S1_a_at--347--7435Chr12:4992983..4993006 (24 bp)
GTGTTTTTCCTCATTGCAAATACAT
NONE
Os.28197.1.S1_a_at--280--10754Chr12:4992970..4992994 (25 bp)
TTGCAAATACATGCGAGCCTCACAG
NONE
Os.28197.1.S1_a_at--459--3534Chr12:4992961..4992985 (25 bp)
CATGCGAGCCTCACAGGATGACAGG
NONE
Os.28197.1.S1_a_at--957--7592Chr09:12401658..12401682 (25 bp)
GGGCAAGCCACTCAGTAGATCAATG
NONE
Os.28197.1.S1_a_at--392--7413Chr09:12401594..12401618 (25 bp)
GTGATAGCATATCTTACAAACTTAA
NONE
Os.28197.1.S1_a_at--476--6035Chr12:4992840..4992864 (25 bp)
GAGATGATTTGTGAACCACTTAATG
NONE
Os.28197.1.S1_a_at--1114--7354Chr12:4992830..4992854 (25 bp)
GTGAACCACTTAATGTGCGATTGAA
NONE
Target Sequence 
GGTTCTAGCTCAAGTCCAAATGCATGGACAGGTTTTGGTGTAATCCATTCTCAGGTTGTGTTTTTCCTCATTGCAAATAC
ATGCGAGCCTCACAGGATGACAGGGGCAAGCCACTCAGTAGATCAATGATGTTTATTGTCTTGTAAATCATAAATATACC
ATTGATTGTGATAGCATATCTTACAAACTTAATTACCATTGAGATGATTTGTGAACCACTTAATGTGCGATTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28197.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis