Browse Element(s) Details


Os.28197.1.S2_at

Description gb:AK119429.1
DB_XREF= gi:37989052
TID=Os.28197.1
CNT=37
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.28197 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0036M16.5 (OSJNBa0036M16.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-133-A01, full insert sequence.
FL= gb:AK119429.1 gb:AK061672.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3330011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g33270Os.5697.1.S1_at10/117+19885510..19886589expressed protein
LOC_Os07g33280Os.6516.1.S1_at11/117+19897516..19898337expressed protein
LOC_Os07g33290OsAffx.10075.1.S1_at4/117+19902255..19903268hypothetical protein
LOC_Os07g33300OsAffx.5514.2.S1_at11/117+19903331..19907930expressed protein
LOC_Os07g33300Os.28197.1.S2_at11/117+19903331..19907930expressed protein
LOC_Os07g33300Os.28197.1.S1_a_at10/117+19903331..19907930expressed protein
LOC_Os07g33300OsAffx.5514.1.S1_x_at4/117+19903331..19907930expressed protein
LOC_Os07g33310Os.14708.1.S1_at11/117+19909672..19912872MATE efflux family protein, expressed
LOC_Os07g33310Os.14708.2.S1_at5/117+19909672..19912872MATE efflux family protein, expressed
LOC_Os07g33320OsAffx.28727.1.S1_at11/117+19915361..19915690expressed protein
LOC_Os07g33330Os.16984.2.S1_a_at11/117+19918642..19922640RNA Binding Protein 45, putative, expressed
LOC_Os07g33340Os.24708.1.S1_at11/117+19924412..19930300DEAD/DEAH box helicase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28197.1.S2_at--186--7091Chr07:19904097..19904121 (25 bp)
GTCAAGGCTCAAGGACACGCCACTG
LOC_Os07g33300
Os.28197.1.S2_at--440--2931Chr07:19904087..19904111 (25 bp)
AAGGACACGCCACTGCTAGTGCTAG
LOC_Os07g33300
Os.28197.1.S2_at--729--7931Chr07:19903839..19903863 (25 bp)
GGATTCTTTATCCACTCCAGAACCA
LOC_Os07g33300
Os.28197.1.S2_at--385--9231Chr07:19903824..19903848 (25 bp)
TCCAGAACCACTACTGCCAGATGTG
LOC_Os07g33300
Os.28197.1.S2_at--790--7271Chr07:19903802..19903826 (25 bp)
GTGCCAGTAGAACAACCACAATCTC
LOC_Os07g33300
Os.28197.1.S2_at--254--1331Chr07:19903776..19903800 (25 bp)
AGAGGATTCCTGTGCTGCTGAAATA
LOC_Os07g33300
Os.28197.1.S2_at--1023--6231Chr07:19903614..19903638 (25 bp)
GATGGAAATGCACCACCTGGATATG
LOC_Os07g33300
Os.28197.1.S2_at--1138--8631Chr07:19903529..19903553 (25 bp)
TGGGATAATAACCTAGCTTGCTGAT
LOC_Os07g33300
Os.28197.1.S2_at--123--4931Chr07:19903514..19903538 (25 bp)
GCTTGCTGATTGGAATTTTTCTCAT
LOC_Os07g33300
Os.28197.1.S2_at--631--1371Chr07:19903434..19903458 (25 bp)
AGAGCCATATACTTACCCTTTTAAT
LOC_Os07g33300
Os.28197.1.S2_at--553--10451Chr07:19903422..19903446 (25 bp)
TTACCCTTTTAATTTTCCTATGCAT
LOC_Os07g33300
Target Sequence 
GTCAAGGCTCAAGGACACGCCACTGCTAGTGCTAGCTGCTTCTTGTTCTAGCCTCAAGAAAGCAATGGATTCTTTATCCA
CTCCAGAACCACTACTGCCAGATGTGCCAGTAGAACAACCACAATCTCAAGAGGATTCCTGTGCTGCTGAAATATAGGAG
CAAACTATAATGATATGTTGTATATAACTTTCTTTTTTCTTAGTCATATTCAACATAAAATTGACATAACAGAGANAGAA
CTAGTAAGTGTGGATGAAGCTAATCTTCTTGATGATGATGGGAATTCTGAAGATGGAAATGCACCACCTGGATATGGATG
ATCATGCTNTTTTTAGTGGTGATATTGGACAACCAAATGAAGCAAACAACGATCAATGGGATAATAACCTAGCTTGCTGA
TTGGAATTTTTCTCATGTTTAGGAGTTTTTGTCATGAATTTGTTGGCTGTGTACTCNCCTTGTATGGGTTAAGAGCCATA
TACTTACCCTTTTAATTTTCCTATGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28197.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis