Browse Element(s) Details


Os.13599.1.S1_at

Description gb:BU673676
DB_XREF= gi:23514511
DB_XREF=NL_18_69
CLONE=NL_18_69
TID=Os.13599.1
CNT=10
FEA=FLmRNA
TIER=Stack
STK=7
UG=Os.13599 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-304-F08, full insert sequence
FL= gb:AK061373.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3324011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g33210Os.56983.1.S1_at1/117+19836882..19840894expressed protein
LOC_Os07g33220Os.14331.1.S1_at11/117+19849290..19852778BNR/Asp-box repeat family protein, putative, expressed
LOC_Os07g33230OsAffx.5512.1.S1_at11/117+19857532..19859359Protein phosphatase 2C containing protein
LOC_Os07g33240Os.13599.1.S1_at11/117+19859915..19862826expressed protein
LOC_Os07g33250NANA7+19867227..19870498retrotransposon protein, putative, unclassified
LOC_Os07g33260NANA7+19871140..19877295transposon protein, putative, unclassified
LOC_Os07g33270Os.5697.1.S1_at10/117+19885510..19886589expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0004521molecular_functionendoribonuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13599.1.S1_at--1086--9631Chr07:19861317..19861341 (25 bp)
TCAGACAGAGAAGGCCCCGGCAGCA
LOC_Os07g33240
Os.13599.1.S1_at--742--891Chr07:19861344..19861368 (25 bp)
AGGCCCGTATTCTCAGGCCATCAAA
LOC_Os07g33240
Os.13599.1.S1_at--774--271Chr07:19861376..19861400 (25 bp)
ATATGGTCTTTGTCTCTGGAGTTCT
LOC_Os07g33240
Os.13599.1.S1_at--1150--8031Chr07:19861393..19861416 (24 bp)
GGAGTTCTTGGCCTAAACCCTGAGA
LOC_Os07g33240
Os.13599.1.S1_at--1114--1471Chr07:19862043..19862067 (25 bp)
AGCAAGTGGTGCTAGCTACTCTTCA
LOC_Os07g33240
Os.13599.1.S1_at--12--2531Chr07:19862411..19862435 (25 bp)
AACTTACCAAGTAGCAGCTCTGCCG
LOC_Os07g33240
Os.13599.1.S1_at--1012--9471Chr07:19862429..19862453 (25 bp)
TCTGCCGCTGAACGCCAGAATCGAG
LOC_Os07g33240
Os.13599.1.S1_at--325--1291Chr07:19862452..19862476 (25 bp)
AGATCGAGTGCATTGCTGCTCTCTA
LOC_Os07g33240
Os.13599.1.S1_at--695--71Chr07:19862463..19862487 (25 bp)
ATTGCTGCTCTCTAGTTACCTGCTA
LOC_Os07g33240
Os.13599.1.S1_at--3--6791Chr07:19862477..19862501 (25 bp)
GTTACCTGCTACTGTCTATCAATCA
LOC_Os07g33240
Os.13599.1.S1_at--594--1991Chr07:19862560..19862584 (25 bp)
ACTGCCATTCTGAACCTGATCTTGT
LOC_Os07g33240
Target Sequence 
TCAGACAGAGAAGGCCCCGGCAGCATTAGGCCCGTATTCTCAGGCCATCAAAGCCAACAATATGGTCTTTGTCTCTGGAG
TTCTTGGCCTAAACCCTGAGACTGGAAAGTTTGTATCTGAAAGCGTGGAGGAGCAAACTGAACAGGTTATGAAGAATATG
GGTGAAATATTGAAAGCAAGTGGTGCTAGCTACTCTTCAGTTGTCAAGACAACAATCATGTTGGCTGATCTACAAGATTT
CAAGAAAGTGAATGAGATCTATGCCAAATATTTTCCAGCTCCTGCACCAGCACGCTCAACTTACCAAGTAGCAGCTCTGC
CGCTGAACGCCAGAATCGAGATCGAGTGCATTGCTGCTCTCTAGTTACCTGCTACTGTCTATCAATCAAATTGCCAATAA
GCATTCTGTGGTGCCGTTCTAGTTGGTCACTATCCTGGAAGAATGCACTGCCATTCTGAACCTGATCTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13599.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis