Browse Element(s) Details


Os.56983.1.S1_at

Description gb:AK110680.1
DB_XREF= gi:32995889
TID=Os.56983.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56983 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-169-H03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-169-H03, full insert sequence.
FL= gb:AK110680.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0223011/11expressed protein
LOC_Os07g332101/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g02180OsAffx.4233.1.S1_at11/115+663461..664713hypothetical protein
LOC_Os05g02190OsAffx.26691.1.S1_at11/115+666008..668371expressed protein
LOC_Os05g02200Os.55575.1.S1_at11/115+668807..66981433 kDa secretory protein, putative, expressed
LOC_Os05g02210Os.54046.1.S1_at1/115+672431..674416pentatricopeptide, putative
LOC_Os05g02220Os.34061.1.S1_a_at11/115+679625..683350ACT domain-containing protein, putative, expressed
LOC_Os05g02220Os.23458.1.A1_x_at11/115+679625..683350ACT domain-containing protein, putative, expressed
LOC_Os05g02230Os.56983.1.S1_at11/115+684841..685901expressed protein
LOC_Os05g02240Os.54675.1.S1_at11/115+689591..693936cation/H+ exchanger, putative, expressed
LOC_Os05g02240Os.54675.1.S1_x_at11/115+689591..693936cation/H+ exchanger, putative, expressed
LOC_Os05g02250Os.4876.1.S1_at10/115+694284..696884expressed protein
LOC_Os05g02260Os.5181.1.S1_a_at11/115+697176..699910expressed protein
LOC_Os05g02270NANA5+705991..707376Zinc knuckle family protein
LOC_Os05g02280NANA5+707738..710222retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56983.1.S1_at--1115--591Chr05:685485..685509 (25 bp)
ATGCCGCTCCGCCAGTTTGGAGAGC
LOC_Os05g02230
Os.56983.1.S1_at--992--9291Chr05:685492..685516 (25 bp)
TCCGCCAGTTTGGAGAGCGAGAGAA
LOC_Os05g02230
Os.56983.1.S1_at--476--10371Chr05:685587..685611 (25 bp)
TTTTTATTGTTTGTGTGTGACTGAC
LOC_Os05g02230
Os.56983.1.S1_at--817--6811Chr05:685628..685651 (24 bp)
GTTTTTTATCTAGTTAATGCCACAT
LOC_Os05g02230
Os.56983.1.S1_at--793--10151Chr05:685633..685657 (25 bp)
TATCTAGTTAATGCCACATAAGCGC
LOC_Os05g02230
Os.56983.1.S1_at--132--3355Chr07:19837240..19837367 (25 bp)
CACGTCAATGACACGTTGGACAAAA
LOC_Os07g33210
Os.56983.1.S1_at--856--5611Chr05:685667..685691 (25 bp)
GACACGTTGGACAAAAACCTAATCA
LOC_Os05g02230
Os.56983.1.S1_at--816--3352Chr05:685711..685735 (25 bp)
CACCTCAGCAAAAACCGGACACAAT
LOC_Os05g02230
Os.56983.1.S1_at--467--4252Chr05:685801..685825 (25 bp)
TCAAGGGACGAAAATTGGACTAGGC
LOC_Os05g02230
Os.56983.1.S1_at--432--3131Chr05:685865..685889 (25 bp)
AATTTAGCCCATTAATACATTCATT
LOC_Os05g02230
Os.56983.1.S1_at--689--9751Chr05:685877..685901 (25 bp)
TAATACATTCATTAGCTTCTGTTCC
LOC_Os05g02230
Target Sequence 
ATGCCGCTCCGCCAGTTTGGAGAGCGAGAGAAGAGGGAGGGAGAGGATAGAGAGGGATAGAGAAATGGGAGGATGGCGTG
TGGGTCCTCATGGGCCCACCATTTTTTATTGTTTGTGTGTGACTGACATGTGGGTCCCACAGTTTTTTATCTAGTTAATG
CCACATAAGCGCCACGTCAATGACACGTTGGACAAAAACCTAATCAAAAGGAGCCACGTAGGCGCCACCTCAGCAAAAAC
CGGACACAATACTACCGAGGGACCTAATTTAAACGGTTTCGTAAGTTGGGGGACCCGTTGTATCCGGTTTTGCGGTCAAG
GGACGAAAATTGGACTAGGCGACAAATAGAGGGACCCAAAGTGAACTTATTCCTTAATTAATTTAGCCCATTAATACATT
CATTAGCTTCTGTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56983.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis