Browse Element(s) Details


Os.5181.1.S1_a_at

Description gb:AB118017.1
DB_XREF= gi:42733521
GEN=bip130
TID=Os.5181.1
CNT=62
FEA=FLmRNA
TIER=FL+Stack
STK=13
UG=Os.5181 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) bip130 mRNA for BRI1-KD interacting protein 130, complete cds.
PROD=BRI1-KD interacting protein 130
FL= gb:AB118017.1 gb:AK065006.1 gb:AK120850.1 gb:AK061727.1 gb:AK072323.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0226011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g02210Os.54046.1.S1_at1/115+672431..674416pentatricopeptide, putative
LOC_Os05g02220Os.34061.1.S1_a_at11/115+679625..683350ACT domain-containing protein, putative, expressed
LOC_Os05g02220Os.23458.1.A1_x_at11/115+679625..683350ACT domain-containing protein, putative, expressed
LOC_Os05g02230Os.56983.1.S1_at11/115+684841..685901expressed protein
LOC_Os05g02240Os.54675.1.S1_at11/115+689591..693936cation/H+ exchanger, putative, expressed
LOC_Os05g02240Os.54675.1.S1_x_at11/115+689591..693936cation/H+ exchanger, putative, expressed
LOC_Os05g02250Os.4876.1.S1_at10/115+694284..696884expressed protein
LOC_Os05g02260Os.5181.1.S1_a_at11/115+697176..699910expressed protein
LOC_Os05g02270NANA5+705991..707376Zinc knuckle family protein
LOC_Os05g02280NANA5+707738..710222retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g02290NANA5+711891..713320hypothetical protein
LOC_Os05g02300Os.40422.1.S1_at11/115+716250..717121Histone H2A, putative, expressed
LOC_Os05g02310Os.10399.1.S1_at11/115+717700..721003Soluble inorganic pyrophosphatase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5181.1.S1_a_at--670--7351Chr05:697812..697836 (25 bp)
GTGAATAACAGCTACCAGCGTCGGT
LOC_Os05g02260
Os.5181.1.S1_a_at--621--4011Chr05:697795..697819 (25 bp)
GCGTCGGTCCAAATCCCGGAAGAAG
LOC_Os05g02260
Os.5181.1.S1_a_at--1113--2351Chr05:697720..697744 (25 bp)
AAACCACCAGAATGCTATCCAGAGT
LOC_Os05g02260
Os.5181.1.S1_a_at--279--10151Chr05:697705..697729 (25 bp)
TATCCAGAGTTCAGCAGTGCTCCAA
LOC_Os05g02260
Os.5181.1.S1_a_at--9--3811Chr05:697610..697710 (25 bp)
CTCCAAGCTCCTGGCGAATTTGATA
LOC_Os05g02260
Os.5181.1.S1_a_at--933--7071Chr05:697558..697582 (25 bp)
GTAATTCAGCACCAGACGATCTCAA
LOC_Os05g02260
Os.5181.1.S1_a_at--494--4891Chr05:697471..697495 (25 bp)
GCTTTTTGCGTGAATCGGCTGCTAA
LOC_Os05g02260
Os.5181.1.S1_a_at--85--651Chr05:697445..697469 (25 bp)
ATGCATTTCTCCACTGCTGAGGCTT
LOC_Os05g02260
Os.5181.1.S1_a_at--312--6571Chr05:697392..697416 (25 bp)
GATTCTCCCTTGGTATGTAAATATG
LOC_Os05g02260
Os.5181.1.S1_a_at--876--6831Chr05:697329..697353 (25 bp)
GTTTCCTGCTGTGTGAGGCGTTAAG
LOC_Os05g02260
Os.5181.1.S1_a_at--959--2771Chr05:697307..697331 (25 bp)
AAGAGAACTTCTGGCGTGCTTTGAT
LOC_Os05g02260
Target Sequence 
GTGAATAACAGCTACCAGCGTCGGTCCAAATCCCGGAAGAAGGACAAGAATAAGCAGAAGCAGAAACAAAAGCAAAAGGG
TAGGTCCAAGAAAAACCACCAGAATGCTATCCAGAGTTCAGCAGTGCTCCAAGCTCCTGGCGAATTTGATAGGCTCAAGG
ATGCTGAAACCACAAGTAGTAATTCAGCACCAGACGATCTCAACAAACATGAGACCGATATATTGGATTATGGCATCAGC
AGTCAAGACGCCAAATGNGGAAGCAGCTTTTTGCGTGAATCGGCTGCTAAAATGCATTTCTCCACTGCTGAGGCTTCCTG
AAAGAAAGGAAAATGAGTCCTGCNGATTCTCCCTTGGTATGTAAATATGATGGATGTGTAGATAAATAAAATCCAGTTTG
TTGTTGTGTTTCCTGCTGTGTGAGGCGTTAAGAGAACTTCTGGCGTGCTTTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5181.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis