Browse Element(s) Details


Os.54675.1.S1_x_at

Description gb:AK106443.1
DB_XREF= gi:32991652
TID=Os.54675.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54675 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-103-D12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-103-D12, full insert sequence.
FL= gb:AK106443.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0224011/11cation/H+ exchanger, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g02180OsAffx.4233.1.S1_at11/115+663461..664713hypothetical protein
LOC_Os05g02190OsAffx.26691.1.S1_at11/115+666008..668371expressed protein
LOC_Os05g02200Os.55575.1.S1_at11/115+668807..66981433 kDa secretory protein, putative, expressed
LOC_Os05g02210Os.54046.1.S1_at1/115+672431..674416pentatricopeptide, putative
LOC_Os05g02220Os.34061.1.S1_a_at11/115+679625..683350ACT domain-containing protein, putative, expressed
LOC_Os05g02220Os.23458.1.A1_x_at11/115+679625..683350ACT domain-containing protein, putative, expressed
LOC_Os05g02230Os.56983.1.S1_at11/115+684841..685901expressed protein
LOC_Os05g02240Os.54675.1.S1_at11/115+689591..693936cation/H+ exchanger, putative, expressed
LOC_Os05g02240Os.54675.1.S1_x_at11/115+689591..693936cation/H+ exchanger, putative, expressed
LOC_Os05g02250Os.4876.1.S1_at10/115+694284..696884expressed protein
LOC_Os05g02260Os.5181.1.S1_a_at11/115+697176..699910expressed protein
LOC_Os05g02270NANA5+705991..707376Zinc knuckle family protein
LOC_Os05g02280NANA5+707738..710222retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g02290NANA5+711891..713320hypothetical protein
LOC_Os05g02300Os.40422.1.S1_at11/115+716250..717121Histone H2A, putative, expressed
LOC_Os05g02310Os.10399.1.S1_at11/115+717700..721003Soluble inorganic pyrophosphatase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006812biological_processcation transport
GO:0005451molecular_functionmonovalent cation:proton antiporter activity
GO:0015385molecular_functionsodium:hydrogen antiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54675.1.S1_x_at--573--1431Chr05:693279..693303 (25 bp)
AGAACGCCGACAAGAGCTACACCTT
LOC_Os05g02240
Os.54675.1.S1_x_at--1124--1351Chr05:693291..693315 (25 bp)
AGAGCTACACCTTCTCAACGGCCAT
LOC_Os05g02240
Os.54675.1.S1_x_at--138--7231Chr05:693317..693338 (22 bp)
GTCGACACCCACAAGGAGAAGGAGC
LOC_Os05g02240
Os.54675.1.S1_x_at--374--1511Chr05:693694..693718 (25 bp)
AGCAGCATGACATGAGCAACGCCGA
LOC_Os05g02240
Os.54675.1.S1_x_at--441--1591Chr05:693769..693793 (25 bp)
AGCTCGGCGGCAACAAGGACATGGC
LOC_Os05g02240
Os.54675.1.S1_x_at--787--3491Chr05:693788..693812 (25 bp)
CATGGCCGAGCCATAAAAACACAGA
LOC_Os05g02240
Os.54675.1.S1_x_at--595--5531Chr05:693811..693835 (25 bp)
GAAAAATCATTCACTAGCTAGGATG
LOC_Os05g02240
Os.54675.1.S1_x_at--87--10511Chr05:693820..693844 (25 bp)
TTCACTAGCTAGGATGATGACGACG
LOC_Os05g02240
Os.54675.1.S1_x_at--237--9913Chr06:3746834..3746853 (20 bp)
TACTCCTGTTTAATTAGCTAGCTTG
NONE
Os.54675.1.S1_x_at--602--1571Chr05:693878..693902 (25 bp)
AGCTAGCTTGTAATCGAATGGCAGA
LOC_Os05g02240
Os.54675.1.S1_x_at--679--2411Chr05:693912..693936 (25 bp)
AAAATAAGCCAGATTTGCTAGTAGT
LOC_Os05g02240
Target Sequence 
AGAACGCCGACAAGAGCTACACCTTCTCAACGGCCATCGTCGACACCCACAAGGAGAAGGAGCTGGACGAGGCGGCGGTG
GCGGAATTCCGGCAGAGGATGGGGGCCATGGTGAGGTACGAGGAGAGGGTGGTGGTGGGGAACGTGATCGAGGAGGTGGT
GTCGATCGGGAAGAGCCGGGAGTACGGCCTGGTGGTGGTCGGCAAGGGGCGGCTGCCGTCGGCGATGGTGGCGGAGCTGG
CCGTCCGGGCGGCGGAGCACCCGGAGCTGGGGCCCATCGGCGACGCGCTGGCGTCGGCGGGGCACGGGGTGACGTCGTCG
GTGCTGGTGGTGCAGCAGCATGACATGAGCAACGCCGACGAGCTGCCGGTGTCCATCGTCGTCGACGGCCACGCCCACGA
CGACGGCGAGCTCGGCGGCAACAAGGACATGGCCGAGCCATAAAAACACAGAAAAATCATTCACTAGCTAGGATGATGAC
GACGATGGTGATAAAGATAAATTACTCCTGTTTAATTAGCTAGCTTGTAATCGAATGGCAGAAAAAAATTTAAAATAAGC
CAGATTTGCTAGTAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54675.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis