Browse Element(s) Details


OsAffx.26691.1.S1_at

Description tigr:9633.m00136
TID=OsAffx.26691.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0219011/11expressed protein
LOC_Os08g132194/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g02160NANA5+650291..650665hypothetical protein
LOC_Os05g02170OsAffx.26690.1.S1_at11/115+657944..658240hypothetical protein
LOC_Os05g02180OsAffx.4233.1.S1_at11/115+663461..664713hypothetical protein
LOC_Os05g02190OsAffx.26691.1.S1_at11/115+666008..668371expressed protein
LOC_Os05g02200Os.55575.1.S1_at11/115+668807..66981433 kDa secretory protein, putative, expressed
LOC_Os05g02210Os.54046.1.S1_at1/115+672431..674416pentatricopeptide, putative
LOC_Os05g02220Os.34061.1.S1_a_at11/115+679625..683350ACT domain-containing protein, putative, expressed
LOC_Os05g02220Os.23458.1.A1_x_at11/115+679625..683350ACT domain-containing protein, putative, expressed
LOC_Os05g02230Os.56983.1.S1_at11/115+684841..685901expressed protein
LOC_Os05g02240Os.54675.1.S1_at11/115+689591..693936cation/H+ exchanger, putative, expressed
LOC_Os05g02240Os.54675.1.S1_x_at11/115+689591..693936cation/H+ exchanger, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26691.1.S1_at--455--1591Chr05:666570..666594 (25 bp)
AGCGGCCAAAGCTCACCTTGAAAGA
LOC_Os05g02190
OsAffx.26691.1.S1_at--909--9552Chr08:7854786..7854810 (25 bp)
TCTTGGGTCAGAGACATTGGCCCTG
LOC_Os08g13219
OsAffx.26691.1.S1_at--454--10871Chr05:666486..666510 (25 bp)
TTGGCCCTGATCTCAGACCGAATGA
LOC_Os05g02190
OsAffx.26691.1.S1_at--596--1311Chr05:666446..666470 (25 bp)
AGAGGAACCCGACATCAAGACTGAG
LOC_Os05g02190
OsAffx.26691.1.S1_at--255--5391Chr05:666417..666441 (25 bp)
GAAGCAGCGAGCCTACCACGGTTGA
LOC_Os05g02190
OsAffx.26691.1.S1_at--345--2371Chr05:666358..666382 (25 bp)
AAAGCCAAGCCTGCGTTACAGCGGA
LOC_Os05g02190
OsAffx.26691.1.S1_at--647--7992Chr08:7854958..7854982 (25 bp)
GGATGTACATGGCTCGCGCCTCAAA
LOC_Os08g13219
OsAffx.26691.1.S1_at--760--4552Chr08:7854973..7854997 (25 bp)
GCGCCTCAAACTACACAGATGCACT
LOC_Os08g13219
OsAffx.26691.1.S1_at--512--5372Chr08:7854998..7855022 (25 bp)
GAAGAACTATGTCGAGTCCTACAAA
LOC_Os08g13219
OsAffx.26691.1.S1_at--705--2991Chr05:666214..666238 (25 bp)
AATGACGCAACAAAGCCACCACAGT
LOC_Os05g02190
OsAffx.26691.1.S1_at--653--5491Chr05:666167..666191 (25 bp)
GAACATCTTAGGTGTGATACCACAT
LOC_Os05g02190
Target Sequence 
AGCGGCCAAAGCTCACCTTGAAAGACAAGTGGTGTATTCTGAAGGAGGCAACCAGGCTGTACGGGGCTTCTTGGGTCAGA
GACATTGGCCCTGATCTCAGACCGAATGACTACAAGAAGGTCAAAGAGGAACCCGACATCAAGACTGAGGAGGGAAGCAG
CGAGCCTACCACGGTTGAGGACCTTCTCGGCGCATTAAAGGGTGGAGCAGAGAAAGCCAAGCCTGCGTTACAGCGGATGT
ACATGGCTCGCGCCTCAAACTACACAGATGCACTGAAGAACTATGTCGAGTCCTACAAAGAAGGTCTGAAAGAGCACTTG
GAGGAAGAAGCTATGGGTAAAGGACATCGGCAAGGCAATGACGCAACAAAGCCACCACAGTCACCGTCATCATGATTTTG
TCTGAACATCTTAGGTGTGATACCACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26691.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis