Browse Element(s) Details


Os.55575.1.S1_at

Description gb:AK108350.1
DB_XREF= gi:32993559
TID=Os.55575.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55575 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-142-B11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-142-B11, full insert sequence.
FL= gb:AK108350.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0220011/1133 kDa secretory protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g02160NANA5+650291..650665hypothetical protein
LOC_Os05g02170OsAffx.26690.1.S1_at11/115+657944..658240hypothetical protein
LOC_Os05g02180OsAffx.4233.1.S1_at11/115+663461..664713hypothetical protein
LOC_Os05g02190OsAffx.26691.1.S1_at11/115+666008..668371expressed protein
LOC_Os05g02200Os.55575.1.S1_at11/115+668807..66981433 kDa secretory protein, putative, expressed
LOC_Os05g02210Os.54046.1.S1_at1/115+672431..674416pentatricopeptide, putative
LOC_Os05g02220Os.34061.1.S1_a_at11/115+679625..683350ACT domain-containing protein, putative, expressed
LOC_Os05g02220Os.23458.1.A1_x_at11/115+679625..683350ACT domain-containing protein, putative, expressed
LOC_Os05g02230Os.56983.1.S1_at11/115+684841..685901expressed protein
LOC_Os05g02240Os.54675.1.S1_at11/115+689591..693936cation/H+ exchanger, putative, expressed
LOC_Os05g02240Os.54675.1.S1_x_at11/115+689591..693936cation/H+ exchanger, putative, expressed
LOC_Os05g02250Os.4876.1.S1_at10/115+694284..696884expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55575.1.S1_at--382--3791Chr05:669166..669190 (25 bp)
CTCGGGTGGTGCACGCGCGACATCA
LOC_Os05g02200
Os.55575.1.S1_at--796--991Chr05:669071..669095 (25 bp)
AGGATGCCGCGTGCTGTACAGCAGC
LOC_Os05g02200
Os.55575.1.S1_at--524--8391Chr05:669042..669066 (25 bp)
TGGCGCGCTACGAGACCTACCCATT
LOC_Os05g02200
Os.55575.1.S1_at--475--5651Chr05:668956..668980 (25 bp)
GACAGGGTCGTCTTGAATCCGTAGA
LOC_Os05g02200
Os.55575.1.S1_at--857--5251Chr05:668942..668966 (25 bp)
GAATCCGTAGATTATTTCAACTCTC
LOC_Os05g02200
Os.55575.1.S1_at--737--10331Chr05:668928..668952 (25 bp)
TTTCAACTCTCTATAATGGCCATAT
LOC_Os05g02200
Os.55575.1.S1_at--434--2351Chr05:668886..668910 (25 bp)
AAAAATCCCATATATTACTACTAGG
LOC_Os05g02200
Os.55575.1.S1_at--1091--9891Chr05:668871..668895 (25 bp)
TACTACTAGGAGACGCATTGCAGGT
LOC_Os05g02200
Os.55575.1.S1_at--772--5991Chr05:668862..668886 (25 bp)
GAGACGCATTGCAGGTTTATATGTT
LOC_Os05g02200
Os.55575.1.S1_at--859--4671Chr05:668852..668876 (25 bp)
GCAGGTTTATATGTTTACGGTTGTA
LOC_Os05g02200
Os.55575.1.S1_at--231--3971Chr05:668835..668859 (25 bp)
CGGTTGTAATCCAATTTATCTCATA
LOC_Os05g02200
Target Sequence 
CTCGGGTGGTGCACGCGCGACATCACGGCGGCGGACTGCGGGCTGTGCGTGGCGCAGGCGGTGGCGGAGATGCCCAACTA
CTGCCGATTCCGGCGAGGATGCCGCGTGCTGTACAGCAGCTGCATGGCGCGCTACGAGACCTACCCATTCTTCTTCCCGC
TCGACGGCGGCCAGAGCGCCGACGCCTCCGCCTCCGCCGCCGGCGACTACGACAGGGTCGTCTTGAATCCGTAGATTATT
TCAACTCTCTATAATGGCCATATATATAATAAGGGTATCAAAAAATCCCATATATTACTACTAGGAGACGCATTGCAGGT
TTATATGTTTACGGTTGTAATCCAATTTATCTCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55575.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis