Browse Element(s) Details


Os.23458.1.A1_x_at

Description gb:AK059086.1
DB_XREF= gi:32969104
TID=Os.23458.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23458 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-022-B04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-022-B04, full insert sequence.
FL= gb:AK059086.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0222011/11ACT domain-containing protein, putative, expressed
LOC_Os10g066101/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g02170OsAffx.26690.1.S1_at11/115+657944..658240hypothetical protein
LOC_Os05g02180OsAffx.4233.1.S1_at11/115+663461..664713hypothetical protein
LOC_Os05g02190OsAffx.26691.1.S1_at11/115+666008..668371expressed protein
LOC_Os05g02200Os.55575.1.S1_at11/115+668807..66981433 kDa secretory protein, putative, expressed
LOC_Os05g02210Os.54046.1.S1_at1/115+672431..674416pentatricopeptide, putative
LOC_Os05g02220Os.34061.1.S1_a_at11/115+679625..683350ACT domain-containing protein, putative, expressed
LOC_Os05g02220Os.23458.1.A1_x_at11/115+679625..683350ACT domain-containing protein, putative, expressed
LOC_Os05g02230Os.56983.1.S1_at11/115+684841..685901expressed protein
LOC_Os05g02240Os.54675.1.S1_at11/115+689591..693936cation/H+ exchanger, putative, expressed
LOC_Os05g02240Os.54675.1.S1_x_at11/115+689591..693936cation/H+ exchanger, putative, expressed
LOC_Os05g02250Os.4876.1.S1_at10/115+694284..696884expressed protein
LOC_Os05g02260Os.5181.1.S1_a_at11/115+697176..699910expressed protein
LOC_Os05g02270NANA5+705991..707376Zinc knuckle family protein
LOC_Os05g02280NANA5+707738..710222retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23458.1.A1_x_at--471--4171Chr05:682728..682752 (25 bp)
CGCCTGCTTGTCATCTTCAGAAAGA
LOC_Os05g02220
Os.23458.1.A1_x_at--814--2911Chr05:682772..682796 (25 bp)
AAGGAGCGGATGACATACCCAGAAT
LOC_Os05g02220
Os.23458.1.A1_x_at--656--691Chr05:682855..682879 (25 bp)
ATGAGCATAATTGCATCTCCGTCTC
LOC_Os05g02220
Os.23458.1.A1_x_at--736--571Chr05:682889..682913 (25 bp)
ATCCATTTTCACGTTGCTCACATGT
LOC_Os05g02220
Os.23458.1.A1_x_at--722--7311Chr05:682991..683015 (25 bp)
GTGCTTTGTTTTGGCCAGGGTATTA
LOC_Os05g02220
Os.23458.1.A1_x_at--233--1131Chr05:683054..683078 (25 bp)
AGTGCAAGATGTGCCATCTGCCTCA
LOC_Os05g02220
Os.23458.1.A1_x_at--1119--10651Chr05:683101..683125 (25 bp)
TTCCTACCTTCCTGTATGATTGCTA
LOC_Os05g02220
Os.23458.1.A1_x_at--814--8871Chr05:683131..683155 (25 bp)
TGAGTAGATTAACCCTGTTCCCTGA
LOC_Os05g02220
Os.23458.1.A1_x_at--988--7012Chr10:3410824..3410843 (20 bp)
GTACTTGTCACTTTGTCAGCATTCA
LOC_Os10g06610
Os.23458.1.A1_x_at--1089--5911Chr05:683203..683227 (25 bp)
GAGCTTAGAGCCCTAGTTTGTTAAT
LOC_Os05g02220
Os.23458.1.A1_x_at--25--7371Chr05:683289..683313 (25 bp)
GTGACCACTATTCTCGTGTACATTG
LOC_Os05g02220
Target Sequence 
CGCCTGCTTGTCATCTTCAGAAAGAGCTGGCAATATGTGTAACAAAGGAGCGGATGACATACCCAGAATATGTTATTTGG
AGTTACATACTCTGAGCACTGTTGTAAATGGTTTCTGAAAANGACAAATGAGCATAATTGCATCTCCGTCTCCCAATTCC
AATCCATTTTCACGTTGCTCACATGTTATGTCATGAAGAGAGAAAGAAAGAGAGGAAAAAGGCATATGTTTGGTGGGAGG
AGCAAATCGGAGCTTCAATTATTGTGCTTTGTTTTGGCCAGGGTATTACTGGATGCTGACACAGATACATGAGCTTGTTG
TAAAGTAGTGCAAGATGTGCCATCTGCCTCACCTGCCTTGCTTTCCTGCCTCCTTCCTACCTTCCTGTATGATTGCTATT
TCTTGAGTAGATTAACCCTGTTCCCTGATGTGGGGTTTGTACTTGTCACTTTGTCAGCATTCATGCTAGTTTNTAGAGCT
TAGAGCCCTAGTTTGTTAATGCAAAAGCATATTATAAATATATGTACCATCTGGTTGTAAATGANNNGNNGAAATTCTCT
AGTGACCACTATTCTCGTGTACATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23458.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis