Browse Element(s) Details


OsAffx.4233.1.S1_at

Description tigr:9633.m00135
TID=OsAffx.4233.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0218011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g02160NANA5+650291..650665hypothetical protein
LOC_Os05g02170OsAffx.26690.1.S1_at11/115+657944..658240hypothetical protein
LOC_Os05g02180OsAffx.4233.1.S1_at11/115+663461..664713hypothetical protein
LOC_Os05g02190OsAffx.26691.1.S1_at11/115+666008..668371expressed protein
LOC_Os05g02200Os.55575.1.S1_at11/115+668807..66981433 kDa secretory protein, putative, expressed
LOC_Os05g02210Os.54046.1.S1_at1/115+672431..674416pentatricopeptide, putative
LOC_Os05g02220Os.34061.1.S1_a_at11/115+679625..683350ACT domain-containing protein, putative, expressed
LOC_Os05g02220Os.23458.1.A1_x_at11/115+679625..683350ACT domain-containing protein, putative, expressed
LOC_Os05g02230Os.56983.1.S1_at11/115+684841..685901expressed protein
LOC_Os05g02240Os.54675.1.S1_at11/115+689591..693936cation/H+ exchanger, putative, expressed
LOC_Os05g02240Os.54675.1.S1_x_at11/115+689591..693936cation/H+ exchanger, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4233.1.S1_at--135--7211Chr05:664168..664192 (25 bp)
GTCGTCGACGACAGAGAATTCAGCA
LOC_Os05g02180
OsAffx.4233.1.S1_at--949--8591Chr05:664244..664268 (25 bp)
TGGTCGTCGGAAGCTGCAGCACGCT
LOC_Os05g02180
OsAffx.4233.1.S1_at--893--5051Chr05:664259..664283 (25 bp)
GCAGCACGCTGGATAGCAGGCTCAG
LOC_Os05g02180
OsAffx.4233.1.S1_at--944--8131Chr05:664396..664420 (25 bp)
GGACAGATCACTGCGTGCAGCAGCA
LOC_Os05g02180
OsAffx.4233.1.S1_at--312--7991Chr05:664428..664452 (25 bp)
GGATGCATCCATTGTGCTCTACGAC
LOC_Os05g02180
OsAffx.4233.1.S1_at--25--2871Chr05:664460..664484 (25 bp)
AAGTGAACGCGACCAGCAATTCTTC
LOC_Os05g02180
OsAffx.4233.1.S1_at--799--1471Chr05:664474..664498 (25 bp)
AGCAATTCTTCAGCTGGAGGCGCCG
LOC_Os05g02180
OsAffx.4233.1.S1_at--1118--7131Chr05:664561..664585 (25 bp)
GTCTTGACGCTCATTGCTGCTGCAG
LOC_Os05g02180
OsAffx.4233.1.S1_at--159--8951Chr05:664593..664617 (25 bp)
TGACTGCCACCATTATCGCACAAAT
LOC_Os05g02180
OsAffx.4233.1.S1_at--520--771Chr05:664616..664640 (25 bp)
ATGTCGAATTCACTCCAAGGATCTG
LOC_Os05g02180
OsAffx.4233.1.S1_at--1030--1371Chr05:664649..664673 (25 bp)
AGAGCCTTGAAGTCAGCATCTGCGG
LOC_Os05g02180
Target Sequence 
GTCGTCGACGACAGAGAATTCAGCAAAGGGCTAATCGAATTTAGAAGCCTGAGCATGCCAAGAGGTGTCGAGGATGTGGT
CGTCGGAAGCTGCAGCACGCTGGATAGCAGGCTCAGCACGGTCGAGCTCTCCTACGCCTACATCGGAGGCGCCGTCGAGG
CCGCCGTCGACGTCACCCTGCGCCTGCCTGCCGCCGCCGGCGCCGGCCGCCATCGTCGCTGCTTCCATGGACAGATCACT
GCGTGCAGCAGCAGCATCCCGGATGCATCCATTGTGCTCTACGACAGCAGCAAAGTGAACGCGACCAGCAATTCTTCAGC
TGGAGGCGCCGCCGGAGACGTCGCCGTCGATCTTGCCCGCCGCGTCATGGCCGTCCGTGCGGCCGACGAGCTCGTCTTGA
CGCTCATTGCTGCTGCAGGCGATGCTGACTGCCACCATTATCGCACAAATGTCGAATTCACTCCAAGGATCTGTGGTTCA
GAGAGCCTTGAAGTCAGCATCTGCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4233.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis