Browse Element(s) Details


Os.34061.1.S1_a_at

Description gb:AK072967.1
DB_XREF= gi:32982990
TID=Os.34061.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.34061 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023146M23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023146M23, full insert sequence.
FL= gb:AK071029.1 gb:AK072967.1 gb:AK070885.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0222011/11ACT domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g02170OsAffx.26690.1.S1_at11/115+657944..658240hypothetical protein
LOC_Os05g02180OsAffx.4233.1.S1_at11/115+663461..664713hypothetical protein
LOC_Os05g02190OsAffx.26691.1.S1_at11/115+666008..668371expressed protein
LOC_Os05g02200Os.55575.1.S1_at11/115+668807..66981433 kDa secretory protein, putative, expressed
LOC_Os05g02210Os.54046.1.S1_at1/115+672431..674416pentatricopeptide, putative
LOC_Os05g02220Os.34061.1.S1_a_at11/115+679625..683350ACT domain-containing protein, putative, expressed
LOC_Os05g02220Os.23458.1.A1_x_at11/115+679625..683350ACT domain-containing protein, putative, expressed
LOC_Os05g02230Os.56983.1.S1_at11/115+684841..685901expressed protein
LOC_Os05g02240Os.54675.1.S1_at11/115+689591..693936cation/H+ exchanger, putative, expressed
LOC_Os05g02240Os.54675.1.S1_x_at11/115+689591..693936cation/H+ exchanger, putative, expressed
LOC_Os05g02250Os.4876.1.S1_at10/115+694284..696884expressed protein
LOC_Os05g02260Os.5181.1.S1_a_at11/115+697176..699910expressed protein
LOC_Os05g02270NANA5+705991..707376Zinc knuckle family protein
LOC_Os05g02280NANA5+707738..710222retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34061.1.S1_a_at--598--2511Chr05:681944..681968 (25 bp)
AACATATGGCCGATTCTGGTCAGAC
LOC_Os05g02220
Os.34061.1.S1_a_at--92--2091Chr05:681945..681969 (25 bp)
ACATATGGCCGATTCTGGTCAGACA
LOC_Os05g02220
Os.34061.1.S1_a_at--815--3571Chr05:681946..681970 (25 bp)
CATATGGCCGATTCTGGTCAGACAA
LOC_Os05g02220
Os.34061.1.S1_a_at--901--271Chr05:681947..681971 (25 bp)
ATATGGCCGATTCTGGTCAGACAAG
LOC_Os05g02220
Os.34061.1.S1_a_at--418--10091Chr05:681948..681972 (25 bp)
TATGGCCGATTCTGGTCAGACAAGA
LOC_Os05g02220
Os.34061.1.S1_a_at--771--871Chr05:681949..681973 (25 bp)
ATGGCCGATTCTGGTCAGACAAGAA
LOC_Os05g02220
Os.34061.1.S1_a_at--107--8471Chr05:681950..681974 (25 bp)
TGGCCGATTCTGGTCAGACAAGAAA
LOC_Os05g02220
Os.34061.1.S1_a_at--1083--8411Chr05:681951..681975 (25 bp)
GGCCGATTCTGGTCAGACAAGAAAG
LOC_Os05g02220
Os.34061.1.S1_a_at--257--4511Chr05:681952..681976 (25 bp)
GCCGATTCTGGTCAGACAAGAAAGG
LOC_Os05g02220
Os.34061.1.S1_a_at--99--4231Chr05:681953..681977 (25 bp)
CCGATTCTGGTCAGACAAGAAAGGT
LOC_Os05g02220
Os.34061.1.S1_a_at--146--6571Chr05:681955..681979 (25 bp)
GATTCTGGTCAGACAAGAAAGGTTT
LOC_Os05g02220
Target Sequence 
AACATATGGCCGATTCTGGTCAGACAAGAAAGGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34061.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis