Browse Element(s) Details


Os.31301.1.S1_at

Description gb:AK107557.1
DB_XREF= gi:32992766
TID=Os.31301.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31301 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-130-B05, full insert sequence.
FL= gb:AK107557.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1174010/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g11720OsAffx.32083.2.S1_x_at11/111+6324888..6330214Transposable element protein, putative, Transposase_24
LOC_Os01g11720OsAffx.22108.1.S1_at11/111+6324888..6330214Transposable element protein, putative, Transposase_24
LOC_Os01g11720OsAffx.32083.1.S1_at5/111+6324888..6330214Transposable element protein, putative, Transposase_24
LOC_Os01g11720OsAffx.32083.1.S1_x_at2/111+6324888..6330214Transposable element protein, putative, Transposase_24
LOC_Os01g11720OsAffx.32083.3.S1_x_at1/111+6324888..6330214Transposable element protein, putative, Transposase_24
LOC_Os01g11730Os.12340.1.S1_at11/111+6337638..6341122GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11740Os.31301.1.S1_at10/111+6349384..6355142GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11750Os.6097.2.S1_x_at1/111+6358328..6360259GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11760OsAffx.22107.1.S1_x_at11/111+6361865..6363859GDSL-like Lipase/Acylhydrolase family protein
LOC_Os01g11760OsAffx.22107.2.S1_x_at6/111+6361865..6363859GDSL-like Lipase/Acylhydrolase family protein
LOC_Os01g11770NANA1+6364840..6365319hypothetical protein
LOC_Os01g11780OsAffx.11013.2.S1_s_at11/111+6366221..6366868hypothetical protein
LOC_Os01g11790OsAffx.22107.4.S1_at11/111+6374063..6378639GDSL-like Lipase/Acylhydrolase family protein
LOC_Os01g11790OsAffx.22107.2.S1_x_at10/111+6374063..6378639GDSL-like Lipase/Acylhydrolase family protein
LOC_Os01g11790OsAffx.22107.1.S1_x_at6/111+6374063..6378639GDSL-like Lipase/Acylhydrolase family protein
LOC_Os01g11800OsAffx.23206.1.S1_x_at11/111+6379683..6380489hypothetical protein
LOC_Os01g11800OsAffx.26758.1.S1_x_at2/111+6379683..6380489hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31301.1.S1_at--443--1091Chr01:6354567..6354591 (25 bp)
AGTGACTCGTCCAAGCTCCGGGCGT
LOC_Os01g11740
Os.31301.1.S1_at--888--2471Chr01:6354675..6354699 (25 bp)
AACACGTCCATCAACTGGGACGGGA
LOC_Os01g11740
Os.31301.1.S1_at--762--4511Chr01:6354787..6354811 (25 bp)
GCCGCCGCACGTAGACGGATTTGAG
LOC_Os01g11740
Os.31301.1.S1_at--20--3091Chr01:6354845..6354869 (25 bp)
AATACTCTAAGCTACCCTTTGTCAA
LOC_Os01g11740
Os.31301.1.S1_at--592--9791Chr01:6354852..6354876 (25 bp)
TAAGCTACCCTTTGTCAACTTCACT
LOC_Os01g11740
Os.31301.1.S1_at--476--3311Chr01:6354873..6354897 (25 bp)
CACTTTAGTTTTTCACAAGCTCGTT
LOC_Os01g11740
Os.31301.1.S1_at--1162--6731Chr01:6355011..6355035 (25 bp)
GTTCATGCATGGGTATCACGTAAGT
LOC_Os01g11740
Os.31301.1.S1_at--1103--51Chr01:6355051..6355075 (25 bp)
ATTGAATCTTTTATGGGCCTGAGTC
LOC_Os01g11740
Os.31301.1.S1_at--917--7551Chr01:6355065..6355089 (25 bp)
GGGCCTGAGTCGGTATGTAAGATAT
LOC_Os01g11740
Os.31301.1.S1_at--499--3571Chr01:6355096..6355120 (25 bp)
CATACATTGTTTATCGATGCCGATT
LOC_Os01g11740
Os.31301.1.S1_at--746--10211Chr01:6355131..6355155 (25 bp)
TATTATGATGTCGTAGTTGCTATTG
NONE
Target Sequence 
AGTGACTCGTCCAAGCTCCGGGCGTGCTGCGGCGGCGGCGGCGGACCATACAACTACAACGCGACGGTGGCGTGCGGCCT
CCCAGGCACAAGCGTGTGCCCGACCCCCAACACGTCCATCAACTGGGACGGGATCCACCTCACGGAGGCGGCCTACGCCC
GCATCGCCGCCTGCTGGCTGCACGGCCCGCACGCGCATCCGCCCATCCTGGCGGCCGTGCGCCGCCGCACGTAGACGGAT
TTGAGGTTATGTAGAAATCCATCTACTGAAATGCTGATAATACTCTAAGCTACCCTTTGTCAACTTCACTTTAGTTTTTC
ACAAGCTCGTTTTGTAAACTGATAAACGATACGTTTTCTAATAAAAAATAGAATAGGAAAGTTACTTTGAAAAGATCATA
TTATTTTTCAAAAATAAGTTAAGTTAATATTTAATTAATCATGTGTTCATGCATGGGTATCACGTAAGTGGATATATGGT
ACTTATTGAATCTTTTATGGGCCTGAGTCGGTATGTAAGATATATATATCATACATTGTTTATCGATGCCGATTATATAA
TTCTTATTATGATGTCGTAGTTGCTATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31301.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis