Browse Element(s) Details


OsAffx.22108.1.S1_at

Description gb:NM_188449.1
DB_XREF= gi:34903981
TID=OsAffx.22108.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1172011/11Transposable element protein, putative, Transposase_24
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g11690OsAffx.22111.1.S1_x_at4/111+6300364..6300624hypothetical protein
LOC_Os01g11700Os.32925.2.S1_x_at11/111+6301604..6303407GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11700Os.32925.2.S1_at11/111+6301604..6303407GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11700Os.32925.1.S1_at11/111+6301604..6303407GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11704OsAffx.22109.1.S1_at7/111+6308736..6310451hypothetical protein
LOC_Os01g11704Os.52239.1.S1_at1/111+6308736..6310451hypothetical protein
LOC_Os01g11710Os.10533.1.S1_at11/111+6315932..6319253GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11720OsAffx.32083.2.S1_x_at11/111+6324888..6330214Transposable element protein, putative, Transposase_24
LOC_Os01g11720OsAffx.22108.1.S1_at11/111+6324888..6330214Transposable element protein, putative, Transposase_24
LOC_Os01g11720OsAffx.32083.1.S1_at5/111+6324888..6330214Transposable element protein, putative, Transposase_24
LOC_Os01g11720OsAffx.32083.1.S1_x_at2/111+6324888..6330214Transposable element protein, putative, Transposase_24
LOC_Os01g11720OsAffx.32083.3.S1_x_at1/111+6324888..6330214Transposable element protein, putative, Transposase_24
LOC_Os01g11730Os.12340.1.S1_at11/111+6337638..6341122GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11740Os.31301.1.S1_at10/111+6349384..6355142GDSL-like Lipase/Acylhydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22108.1.S1_at--330--2771Chr01:6327506..6327530 (25 bp)
AAGACGATGGCCTCTCGCGTACGAG
LOC_Os01g11720
OsAffx.22108.1.S1_at--273--4091Chr01:6327438..6327462 (25 bp)
CGACGCTTGGGCTGCGCACCTACTG
LOC_Os01g11720
OsAffx.22108.1.S1_at--449--5052Chr05:12321458..12321482 (25 bp)
GCAGCAGCATCGACACGCCGCAGAT
NONE
OsAffx.22108.1.S1_at--1032--5631Chr01:6327242..6327266 (25 bp)
GACACGCCGCAGATTCATCAGTGAT
LOC_Os01g11720
OsAffx.22108.1.S1_at--821--1113Chr05:12321489..12321512 (24 bp)
AGTGATTTTCTTCCTGGTATTGCCC
NONE
OsAffx.22108.1.S1_at--17--172Chr05:12321492..12321516 (25 bp)
ATTTTCTTCCTGGTATTGCCCAAAT
NONE
OsAffx.22108.1.S1_at--423--4272Chr05:12321500..12321524 (25 bp)
CCTGGTATTGCCCAAATTCCTCAGC
NONE
OsAffx.22108.1.S1_at--1036--2232Chr05:12321513..12321537 (25 bp)
AAATTCCTCAGCCATCGAATCCTGG
NONE
OsAffx.22108.1.S1_at--637--9672Chr05:12321520..12321544 (25 bp)
TCAGCCATCGAATCCTGGCAACAGT
NONE
OsAffx.22108.1.S1_at--816--5251Chr01:6327182..6327206 (25 bp)
GAATCCTGGCAACAGTAGCGATCCT
LOC_Os01g11720
OsAffx.22108.1.S1_at--454--3911Chr01:6327177..6327201 (25 bp)
CTGGCAACAGTAGCGATCCTAATTG
LOC_Os01g11720
Target Sequence 
AAGACGATGGCCTCTCGCGTACGAGCCCCACGGCCGCCGCCTGTGCCGTCTGGGCTCAGCGCCGCCGGCGACGCTTGGGC
TGCGCACCTACTGCCCACGCCATTGCCGCCTGCGCCGTCCAGGGCTGAGCGCCGCCAGAGCTGCGTGCCCCCCGTGTCAT
CAGCCAGCCACACGCCCATCGTTTGCCCCACAGCAGCAGCATCGACACGCCGCAGATTCATCAGTGATTTTCTTCCTGGT
ATTGCCCAAATTCCTCAGCCATCGAATCCTGGCAACAGTAGCGATCCTAATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22108.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis