Browse Element(s) Details


OsAffx.22111.1.S1_x_at

Description gb:NM_188442.1
DB_XREF= gi:34903967
GEN=OSJNBa0038J17.29
TID=OsAffx.22111.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0038J17.29 (OSJNBa0038J17.29), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g116904/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g11650Os.3850.3.S1_at11/111+6275322..6280450GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11650Os.3850.1.S1_a_at11/111+6275322..6280450GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11650Os.54974.1.S1_x_at1/111+6275322..6280450GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11660Os.33387.1.S1_at11/111+6285167..6289103GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11670Os.45963.1.S1_x_at2/111+6292793..6294136Serine carboxypeptidase family protein
LOC_Os01g11670Os.45963.1.S1_at2/111+6292793..6294136Serine carboxypeptidase family protein
LOC_Os01g11680OsAffx.25108.4.S1_s_at11/111+6295746..6298199transposon protein, putative, unclassified
LOC_Os01g11680OsAffx.25108.1.S1_x_at7/111+6295746..6298199transposon protein, putative, unclassified
LOC_Os01g11680OsAffx.6420.1.S1_at1/111+6295746..6298199transposon protein, putative, unclassified
LOC_Os01g11690OsAffx.22111.1.S1_x_at4/111+6300364..6300624hypothetical protein
LOC_Os01g11700Os.32925.2.S1_x_at11/111+6301604..6303407GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11700Os.32925.2.S1_at11/111+6301604..6303407GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11700Os.32925.1.S1_at11/111+6301604..6303407GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11704OsAffx.22109.1.S1_at7/111+6308736..6310451hypothetical protein
LOC_Os01g11704Os.52239.1.S1_at1/111+6308736..6310451hypothetical protein
LOC_Os01g11710Os.10533.1.S1_at11/111+6315932..6319253GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11720OsAffx.32083.2.S1_x_at11/111+6324888..6330214Transposable element protein, putative, Transposase_24
LOC_Os01g11720OsAffx.22108.1.S1_at11/111+6324888..6330214Transposable element protein, putative, Transposase_24
LOC_Os01g11720OsAffx.32083.1.S1_at5/111+6324888..6330214Transposable element protein, putative, Transposase_24
LOC_Os01g11720OsAffx.32083.1.S1_x_at2/111+6324888..6330214Transposable element protein, putative, Transposase_24
LOC_Os01g11720OsAffx.32083.3.S1_x_at1/111+6324888..6330214Transposable element protein, putative, Transposase_24

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22111.1.S1_x_at--48--6311Chr01:6300601..6300625 (25 bp)
GATGCGGCCGAACAACGCTGCCTAT
NONE
OsAffx.22111.1.S1_x_at--704--2211Chr01:6300590..6300614 (25 bp)
ACAACGCTGCCTATGCGGAGGAGCT
LOC_Os01g11690
OsAffx.22111.1.S1_x_at--451--2592Chr01:6299979..6299998 (20 bp)
AACGCTGCCTATGCGGAGGAGCTCG
NONE
OsAffx.22111.1.S1_x_at--23--8411Chr01:6300480..6300504 (25 bp)
GGCGCGGGCACAACGCGGCTCGCGG
LOC_Os01g11690
OsAffx.22111.1.S1_x_at--172--1633Chr03:9888071..9888095 (25 bp)
AGCGGTGCCGATGTGGAGGAGCTCG
NONE
OsAffx.22111.1.S1_x_at--528--4231NONE
CCGATGCGGCGGCTGTCATCATCAT
NONE
OsAffx.22111.1.S1_x_at--1100--4692Chr03:29784270..29784779 (25 bp)
GCGGCGGCTGTCATCATCATCGTCG
NONE
OsAffx.22111.1.S1_x_at--1037--9291Chr01:6300250..6300274 (25 bp)
TCCCTCCGGCCGACTAGTGGTGACG
NONE
OsAffx.22111.1.S1_x_at--845--9271Chr01:6300246..6300270 (25 bp)
TCCGGCCGACTAGTGGTGACGCTGT
NONE
OsAffx.22111.1.S1_x_at--231--8411Chr01:6300243..6300267 (25 bp)
GGCCGACTAGTGGTGACGCTGTGTC
NONE
OsAffx.22111.1.S1_x_at--1005--1831Chr01:6300228..6300252 (25 bp)
ACGCTGTGTCGGAGCAGCTGCTGCT
NONE
Target Sequence 
GATGCGGCCGAACAACGCTGCCTATGCGGAGGAGCTCGGCCGAGCGACGGCGGCGCCGATGCGGCGGGGCGCGGCTGAGC
GGCGGCTCGGCGCGAGCGTGGCCGCGCGGCGGCGTGGCCCCGGCGCGGGCACAACGCGGCTCGCGGCCTCGGCGGTGCGG
CTGGGCAGCGGTGCCGATGTGGAGGAGCTCGGCCGAGCGACGGCGGCGCCGATGCGGCGGCTGTCATCATCATCGTCGTC
CCTCCGGCCGACTAGTGGTGACGCTGTGTCGGAGCAGCTGCTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22111.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis