Browse Element(s) Details


OsAffx.22109.1.S1_at

Description gb:NM_188445.1
DB_XREF= gi:34903973
GEN=OSJNBa0038J17.32
TID=OsAffx.22109.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0038J17.32 (OSJNBa0038J17.32), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g117047/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g11660Os.33387.1.S1_at11/111+6285167..6289103GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11670Os.45963.1.S1_x_at2/111+6292793..6294136Serine carboxypeptidase family protein
LOC_Os01g11670Os.45963.1.S1_at2/111+6292793..6294136Serine carboxypeptidase family protein
LOC_Os01g11680OsAffx.25108.4.S1_s_at11/111+6295746..6298199transposon protein, putative, unclassified
LOC_Os01g11680OsAffx.25108.1.S1_x_at7/111+6295746..6298199transposon protein, putative, unclassified
LOC_Os01g11680OsAffx.6420.1.S1_at1/111+6295746..6298199transposon protein, putative, unclassified
LOC_Os01g11690OsAffx.22111.1.S1_x_at4/111+6300364..6300624hypothetical protein
LOC_Os01g11700Os.32925.2.S1_x_at11/111+6301604..6303407GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11700Os.32925.2.S1_at11/111+6301604..6303407GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11700Os.32925.1.S1_at11/111+6301604..6303407GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11704OsAffx.22109.1.S1_at7/111+6308736..6310451hypothetical protein
LOC_Os01g11704Os.52239.1.S1_at1/111+6308736..6310451hypothetical protein
LOC_Os01g11710Os.10533.1.S1_at11/111+6315932..6319253GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11720OsAffx.32083.2.S1_x_at11/111+6324888..6330214Transposable element protein, putative, Transposase_24
LOC_Os01g11720OsAffx.22108.1.S1_at11/111+6324888..6330214Transposable element protein, putative, Transposase_24
LOC_Os01g11720OsAffx.32083.1.S1_at5/111+6324888..6330214Transposable element protein, putative, Transposase_24
LOC_Os01g11720OsAffx.32083.1.S1_x_at2/111+6324888..6330214Transposable element protein, putative, Transposase_24
LOC_Os01g11720OsAffx.32083.3.S1_x_at1/111+6324888..6330214Transposable element protein, putative, Transposase_24

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22109.1.S1_at--661--2231Chr01:6310579..6310915 (25 bp)
AAATTTGCGACATACCAGCGGTTAG
NONE
OsAffx.22109.1.S1_at--1039--1771Chr01:6310532..6310556 (25 bp)
ACCGGTGGGCACAAGGCAGTCAGAC
NONE
OsAffx.22109.1.S1_at--1111--1371Chr01:6310511..6310535 (25 bp)
AGACCGGCGGCAACTAAAGGCGACA
NONE
OsAffx.22109.1.S1_at--1093--6411NONE
GATCTACTTCGGTTCGTAATGTGCT
NONE
OsAffx.22109.1.S1_at--583--2331Chr01:6309908..6309932 (25 bp)
AAAGACATCCACAACGCTAATAGTA
LOC_Os01g11704
OsAffx.22109.1.S1_at--576--291Chr01:6309881..6309905 (25 bp)
ATAGACAGTGTCCTGGTACTCCTTG
LOC_Os01g11704
OsAffx.22109.1.S1_at--385--7011Chr01:6309866..6309890 (25 bp)
GTACTCCTTGTTGCAGTCGACATCA
LOC_Os01g11704
OsAffx.22109.1.S1_at--563--1151Chr01:6309852..6309876 (25 bp)
AGTCGACATCAGCTGCTATGGAGGC
LOC_Os01g11704
OsAffx.22109.1.S1_at--99--3711Chr01:6309837..6309861 (25 bp)
CTATGGAGGCGAGGGCCTTGTCACA
LOC_Os01g11704
OsAffx.22109.1.S1_at--853--7531Chr01:6309825..6309849 (25 bp)
GGGCCTTGTCACACGGAGAGGTTAT
LOC_Os01g11704
OsAffx.22109.1.S1_at--212--9511Chr01:6309794..6309818 (25 bp)
TCTCACAGAAGGAACGACAACGATC
LOC_Os01g11704
Target Sequence 
AAATTTGCGACATACCAGCGGTTAGACCGCGGCAAGGCGGCGGTCAGACCGGTGGGCACAAGGCAGTCAGACCGGCGGCA
ACTAAAGGCGACAGGAGCTGATCTCGGCGGTTCGACCGAACGATCTACTTCGGTTCGTAATGTGCTATTACAGTTGAAAG
ACATCCACAACGCTAATAGTAATATAGACAGTGTCCTGGTACTCCTTGTTGCAGTCGACATCAGCTGCTATGGAGGCGAG
GGCCTTGTCACACGGAGAGGTTATAGAATGTCTCACAGAAGGAACGACAACGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22109.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis