Browse Element(s) Details


OsAffx.6420.1.S1_at

Description tigr:9637.m02454
TID=OsAffx.6420.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2784011/11transposon protein, putative, unclassified
LOC_Os01g116801/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g27800OsAffx.31069.1.S1_x_at1/119+16912698..16917173retrotransposon protein, putative, unclassified
LOC_Os09g27800OsAffx.17106.1.S1_x_at1/119+16912698..16917173retrotransposon protein, putative, unclassified
LOC_Os09g27810NANA9+16918029..16922578retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g27820Os.12201.2.S1_at11/119+16924456..169260451-aminocyclopropane-1-carboxylate oxidase 1, putative, expressed
LOC_Os09g27830Os.6625.1.S1_x_at10/119+16929986..16934951protein disulfide-isomerase domain containing protein, expressed
LOC_Os09g27840OsAffx.6420.1.S1_at11/119+16937030..16938500transposon protein, putative, unclassified
LOC_Os09g27850Os.319.1.S1_at11/119+16940832..16942422expressed protein
LOC_Os09g27860Os.14554.1.S1_at10/119+16944130..16947027expressed protein
LOC_Os09g27870OsAffx.17940.1.S1_at9/119+16948492..16950743hypothetical protein
LOC_Os09g27880OsAffx.6421.1.S1_x_at11/119+16952726..16953814hypothetical protein
LOC_Os09g27890Os.50922.1.S1_at11/119+16957543..16961139LysM domain GPI-anchored protein 1 precursor, putative, expressed
LOC_Os09g27900Os.23773.1.A1_at11/119+16962592..16964809D-xylose-proton symporter, putative, expressed
LOC_Os09g27900Os.23773.2.S1_at2/119+16962592..16964809D-xylose-proton symporter, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6420.1.S1_at--1066--5031Chr09:16938445..16938468 (24 bp)
GCAGATGATGCACTCCGATAGTGAA
LOC_Os09g27840
OsAffx.6420.1.S1_at--204--1331Chr09:16938110..16938134 (25 bp)
AGAGGCTACTGCCATGTATGGTCCC
LOC_Os09g27840
OsAffx.6420.1.S1_at--179--911Chr09:16938053..16938077 (25 bp)
AGGCTGGGATGTTTTGGCATAGATA
LOC_Os09g27840
OsAffx.6420.1.S1_at--293--3271Chr09:16937707..16937731 (25 bp)
CAAACGATTCTGGAATTGGGCCAAA
LOC_Os09g27840
OsAffx.6420.1.S1_at--900--2751Chr09:16937684..16937708 (25 bp)
AAGACGGCATATGAGTTGGCTAGTC
LOC_Os09g27840
OsAffx.6420.1.S1_at--1084--7711Chr09:16937651..16937675 (25 bp)
GGTGGATCACATAATCTAAGCTACA
LOC_Os09g27840
OsAffx.6420.1.S1_at--1064--2691Chr09:16937634..16937658 (25 bp)
AAGCTACAACATTCGTGATCACAAG
LOC_Os09g27840
OsAffx.6420.1.S1_at--489--252Chr09:16937304..16937328 (25 bp)
ATCGGAGGTTCGTGTTAGAAGTTCA
LOC_Os09g27840
OsAffx.6420.1.S1_at--191--6931Chr09:16937248..16937272 (25 bp)
GTAGGACTAGGACCAGACAACAAGG
LOC_Os09g27840
OsAffx.6420.1.S1_at--818--3951Chr09:16937091..16937115 (25 bp)
CGGACCATGTTGGTGCAATGGCACA
LOC_Os09g27840
OsAffx.6420.1.S1_at--412--1331Chr09:16937060..16937084 (25 bp)
AGAGGATAGTGTTTCCAGGGACCAG
LOC_Os09g27840
Target Sequence 
GCAGATGATGCACTCCGATAGTGAAGAGAGGCTACTGCCATGTATGGTCCCCCATGTTGGTATGGAATTCAAATGTTCAG
ATGAGGCTGGGATGTTTTGGCATAGATATGGAGGTCAAAAAGGCTTTGAGGTTAGAAAAAGGAAAATTTCAGATTTACAA
GCTTTTGAAATTGAAACAGCAAACGATTCTGGAATTGGGCCAAAGACGGCATATGAGTTGGCTAGTCGACAAGTTGGTGG
ATCACATAATCTAAGCTACAACATTCGTGATCACAAGAACTATTTGCGGAGCAAGCGCCAAAGGGAGATGGCATATGGTC
AAGAAGAAAAAGGATCGGAGGTTCGTGTTAGAAGTTCAAAGCGAACAAGAAATTGGCTTGATAAAAAGCGTAGGACTAGG
ACCAGACAACAAGGGAAAGGGAAAAAGGGAAAAAGTTCGAAGGAACAAAATAATGGGGGAGATGCGGACCATGTTGGTGC
AATGGCACAAATGGTAGAGGATAGTGTTTCCAGGGACCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6420.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis