Browse Element(s) Details


OsAffx.17940.1.S1_at

Description tigr:9637.m02457
TID=OsAffx.17940.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g278709/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g27820Os.12201.2.S1_at11/119+16924456..169260451-aminocyclopropane-1-carboxylate oxidase 1, putative, expressed
LOC_Os09g27830Os.6625.1.S1_x_at10/119+16929986..16934951protein disulfide-isomerase domain containing protein, expressed
LOC_Os09g27840OsAffx.6420.1.S1_at11/119+16937030..16938500transposon protein, putative, unclassified
LOC_Os09g27850Os.319.1.S1_at11/119+16940832..16942422expressed protein
LOC_Os09g27860Os.14554.1.S1_at10/119+16944130..16947027expressed protein
LOC_Os09g27870OsAffx.17940.1.S1_at9/119+16948492..16950743hypothetical protein
LOC_Os09g27880OsAffx.6421.1.S1_x_at11/119+16952726..16953814hypothetical protein
LOC_Os09g27890Os.50922.1.S1_at11/119+16957543..16961139LysM domain GPI-anchored protein 1 precursor, putative, expressed
LOC_Os09g27900Os.23773.1.A1_at11/119+16962592..16964809D-xylose-proton symporter, putative, expressed
LOC_Os09g27900Os.23773.2.S1_at2/119+16962592..16964809D-xylose-proton symporter, putative, expressed
LOC_Os09g27910Os.51676.1.S1_at11/119+16969179..16970670Eukaryotic aspartyl protease family protein, expressed
LOC_Os09g27920OsAffx.6422.1.S1_at11/119+16971342..16972288hypothetical protein
LOC_Os09g27930OsAffx.30103.4.S1_s_at11/119+16972783..16974635UBiQuitin family member, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17940.1.S1_at--695--5371NONE
GAAGACACGCCAAGAGAGCAATTAT
NONE
OsAffx.17940.1.S1_at--1127--3211NONE
CAAGAGAGCAATTATGGAGTCATGA
NONE
OsAffx.17940.1.S1_at--954--10091Chr09:16948604..16948628 (25 bp)
TATGGAGTCATGATGCGGTAGTGAT
LOC_Os09g27870
OsAffx.17940.1.S1_at--184--7131Chr09:16948598..16948622 (25 bp)
GTCATGATGCGGTAGTGATTGAGAT
LOC_Os09g27870
OsAffx.17940.1.S1_at--620--8052Chr01:38185074..38185166 (25 bp)
GGAGAGGAACAGGAACGCAGCAAAA
NONE
OsAffx.17940.1.S1_at--668--5051Chr09:16948557..16948581 (25 bp)
GCAGCAAAAGCTGATATCTCGATAA
LOC_Os09g27870
OsAffx.17940.1.S1_at--873--2351Chr09:16948551..16948575 (25 bp)
AAAGCTGATATCTCGATAAACGGGA
LOC_Os09g27870
OsAffx.17940.1.S1_at--1094--3771Chr09:16948540..16948564 (25 bp)
CTCGATAAACGGGAGCATCACAGCT
LOC_Os09g27870
OsAffx.17940.1.S1_at--504--9831Chr09:16948535..16948559 (25 bp)
TAAACGGGAGCATCACAGCTCTCCA
LOC_Os09g27870
OsAffx.17940.1.S1_at--454--5931Chr09:16948528..16948552 (25 bp)
GAGCATCACAGCTCTCCATGTACTA
LOC_Os09g27870
OsAffx.17940.1.S1_at--918--3291Chr09:16948522..16948546 (25 bp)
CACAGCTCTCCATGTACTACGCATT
LOC_Os09g27870
Target Sequence 
GAAGACACGCCAAGAGAGCAATTATGGAGTCATGATGCGGTAGTGATTGAGATGGAGAGGAACAGGAACGCAGCAAAAGC
TGATATCTCGATAAACGGGAGCATCACAGCTCTCCATGTACTACGCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17940.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis