Browse Element(s) Details


Os.12201.2.S1_at

Description gb:AK058296.1
DB_XREF= gi:32968314
TID=Os.12201.2
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12201 (NCBI UniGene Cluster)
UG_TITLE=O.sativa mRNA for 1-aminocyclopropane-1-carboxylate oxidase
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-013-F04, full insert sequence.
FL= gb:AK058296.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2782011/111-aminocyclopropane-1-carboxylate oxidase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g27780Os.46995.1.S1_x_at1/119+16899085..16902015retrotransposon protein, putative, unclassified
LOC_Os09g27789NANA9+16907262..16907946NA
LOC_Os09g27800OsAffx.31069.1.S1_x_at1/119+16912698..16917173retrotransposon protein, putative, unclassified
LOC_Os09g27800OsAffx.17106.1.S1_x_at1/119+16912698..16917173retrotransposon protein, putative, unclassified
LOC_Os09g27810NANA9+16918029..16922578retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g27820Os.12201.2.S1_at11/119+16924456..169260451-aminocyclopropane-1-carboxylate oxidase 1, putative, expressed
LOC_Os09g27830Os.6625.1.S1_x_at10/119+16929986..16934951protein disulfide-isomerase domain containing protein, expressed
LOC_Os09g27840OsAffx.6420.1.S1_at11/119+16937030..16938500transposon protein, putative, unclassified
LOC_Os09g27850Os.319.1.S1_at11/119+16940832..16942422expressed protein
LOC_Os09g27860Os.14554.1.S1_at10/119+16944130..16947027expressed protein
LOC_Os09g27870OsAffx.17940.1.S1_at9/119+16948492..16950743hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009693biological_processethylene biosynthesis
GO:0009727biological_processdetection of ethylene stimulus
GO:0009815molecular_function1-aminocyclopropane-1-carboxylate oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12201.2.S1_at--734--1131Chr09:16925661..16925685 (25 bp)
AGTCCATGGAAACCGAGACCTCCAA
LOC_Os09g27820
Os.12201.2.S1_at--1081--4791Chr09:16925718..16925742 (25 bp)
GCTCGCTCTGTTCTGTGTACTGTGT
LOC_Os09g27820
Os.12201.2.S1_at--241--3531Chr09:16925748..16925772 (25 bp)
CATGAACTGTGGTTTCGTCGTCGTT
LOC_Os09g27820
Os.12201.2.S1_at--973--991Chr09:16925790..16925814 (25 bp)
AGGATTCGTCAGAGTGGTTCGTACT
LOC_Os09g27820
Os.12201.2.S1_at--1096--5051Chr09:16925834..16925858 (25 bp)
GCAGCTAGCCAGGTGTAGCCGTGTA
LOC_Os09g27820
Os.12201.2.S1_at--410--5231Chr09:16925864..16925888 (25 bp)
GAATAGATTACTACTCGCGACGAGC
LOC_Os09g27820
Os.12201.2.S1_at--600--3971Chr09:16925884..16925908 (25 bp)
CGAGCTCGAAAGTTTGTACCGTGTC
LOC_Os09g27820
Os.12201.2.S1_at--875--10551Chr09:16925912..16925936 (25 bp)
TTCTTATTTCGATCCGTGTCATAGC
LOC_Os09g27820
Os.12201.2.S1_at--582--7451Chr09:16925927..16925951 (25 bp)
GTGTCATAGCAAGTCCCTGTTTATT
LOC_Os09g27820
Os.12201.2.S1_at--739--3711Chr09:16925958..16925982 (25 bp)
CTACTAGTACTAAGCACTGCCTGCA
LOC_Os09g27820
Os.12201.2.S1_at--1156--5791Chr09:16925993..16926017 (25 bp)
GACCTTGCCTGTATCTTGGTTTGGA
LOC_Os09g27820
Target Sequence 
AGTCCATGGAAACCGAGACCTCCAACCGCATCGCCATCGCTTAGCAACCCCGGCCTCGCTCGCTCTGTTCTGTGTACTGT
GTGTGTGNNCATGAACTGTGGTTTCGTCGTCGTTTTGTGATACTCCTACATAGGATTCGTCAGAGTGGTTCGTACTGTAC
TGAATAAAAGAGCATGCAGCTAGCCAGGTGTAGCCGTGTAGGTATGAATAGATTACTACTCGCGACGAGCTCGAAAGTTT
GTACCGTGTCGGNTTCTTATTTCGATCCGTGTCATAGCAAGTCCCTGTTTATTTCTTGGCTACTAGTACTAAGCACTGCC
TGCAGTCTCCTCGTGACCTTGCCTGTATCTTGGTTTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12201.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis