Browse Element(s) Details


Os.319.1.S1_at

Description gb:AJ277138.1
DB_XREF= gi:8926754
TID=Os.319.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.319 (NCBI UniGene Cluster)
UG_TITLE=Subsp. japonica partial mRNA for putative rice bicoid protein (rb gene)
DEF=Oryza sativa subsp. japonica partial mRNA for putative rice bicoid protein (rb gene).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2785011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g27800OsAffx.31069.1.S1_x_at1/119+16912698..16917173retrotransposon protein, putative, unclassified
LOC_Os09g27800OsAffx.17106.1.S1_x_at1/119+16912698..16917173retrotransposon protein, putative, unclassified
LOC_Os09g27810NANA9+16918029..16922578retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g27820Os.12201.2.S1_at11/119+16924456..169260451-aminocyclopropane-1-carboxylate oxidase 1, putative, expressed
LOC_Os09g27830Os.6625.1.S1_x_at10/119+16929986..16934951protein disulfide-isomerase domain containing protein, expressed
LOC_Os09g27840OsAffx.6420.1.S1_at11/119+16937030..16938500transposon protein, putative, unclassified
LOC_Os09g27850Os.319.1.S1_at11/119+16940832..16942422expressed protein
LOC_Os09g27860Os.14554.1.S1_at10/119+16944130..16947027expressed protein
LOC_Os09g27870OsAffx.17940.1.S1_at9/119+16948492..16950743hypothetical protein
LOC_Os09g27880OsAffx.6421.1.S1_x_at11/119+16952726..16953814hypothetical protein
LOC_Os09g27890Os.50922.1.S1_at11/119+16957543..16961139LysM domain GPI-anchored protein 1 precursor, putative, expressed
LOC_Os09g27900Os.23773.1.A1_at11/119+16962592..16964809D-xylose-proton symporter, putative, expressed
LOC_Os09g27900Os.23773.2.S1_at2/119+16962592..16964809D-xylose-proton symporter, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.319.1.S1_at--1095--6431Chr09:16941832..16941856 (25 bp)
GATCAGTGCCAGTCACTATGGCAAA
LOC_Os09g27850
Os.319.1.S1_at--1030--491Chr09:16941873..16941897 (25 bp)
ATCGGTGCTGTGAATGCCATTGTGA
LOC_Os09g27850
Os.319.1.S1_at--752--731Chr09:16941928..16941952 (25 bp)
ATGTATATCCTTACCTGTGGGAAAC
LOC_Os09g27850
Os.319.1.S1_at--466--2491Chr09:16941950..16941974 (25 bp)
AACAGTTGAGGAGCTGTCCAGCCAA
LOC_Os09g27850
Os.319.1.S1_at--58--1691Chr09:16941969..16941993 (25 bp)
AGCCAACATCCAACTGGAGCAGTGT
LOC_Os09g27850
Os.319.1.S1_at--768--2351Chr09:16942046..16942070 (25 bp)
AAAGCTGCGGAAGTTCAGGCTGACT
LOC_Os09g27850
Os.319.1.S1_at--337--3631Chr09:16942128..16942152 (25 bp)
CTTGATGCCCTGGAGATGGCTGACT
LOC_Os09g27850
Os.319.1.S1_at--326--4751Chr09:16942146..16942170 (25 bp)
GCTGACTGAGTCCATGGGTGATATC
LOC_Os09g27850
Os.319.1.S1_at--64--2911Chr09:16942261..16942285 (25 bp)
AAGGTTGCACATTCCTCAGTCAAAA
LOC_Os09g27850
Os.319.1.S1_at--861--7751Chr09:16942307..16942330 (24 bp)
GGTGTTCTCCTTGTTATTCTGAACA
LOC_Os09g27850
Os.319.1.S1_at--939--4891Chr09:16942347..16942371 (25 bp)
GCTTAGGTGCTAACTTTGTGCTATA
LOC_Os09g27850
Target Sequence 
GATCAGTGCCAGTCACTATGGCAAATGGCAATGGGACTGGGATCGGTGCTGTGAATGCCATTGTGAGAGGGAGGAGTGAG
TTTGAGAAAGGGAAGGATGTATATCCTTACCTGTGGGAAACAGTTGAGGAGCTGTCCAGCCAACATCCAACTGGAGCAGT
GTTCAAGAAGGCGTTTGAGTTGCTTGAAGGATCGAAAGCACAGGTGATGGAGGAAAAGCTGCGGAAGTTCAGGCTGACTG
AGATGAGACAGCAGTTGCGTCGGATGGACCTGATGAAGGACACACTGAGTATGGTGCTTGATGCCCTGGAGATGGCTGAC
TGAGTCCATGGGTGATATCTGGTGAGTAGTGCATTGTTAAAAGGGGGAAATTAGTGTCTTTTTCTTTTCTAGATAGAATC
TCTGTGGTTAATTACTTACCTTTATGGACAAGGTTGCACATTCCTCAGTCAAAAGTTAGGGATAGAACAAGTTATGGTGT
TCTCCTTGTTATTCTGAACAATGTATTTTATGATGCTTAGGTGCTAACTTTGTGCTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.319.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis