Browse Element(s) Details


Os.50922.1.S1_at

Description gb:AK106042.1
DB_XREF= gi:32991251
TID=Os.50922.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50922 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-206-E02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-206-E02, full insert sequence.
FL= gb:AK059479.1 gb:AK106042.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2789011/11LysM domain GPI-anchored protein 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g27830Os.6625.1.S1_x_at10/119+16929986..16934951protein disulfide-isomerase domain containing protein, expressed
LOC_Os09g27840OsAffx.6420.1.S1_at11/119+16937030..16938500transposon protein, putative, unclassified
LOC_Os09g27850Os.319.1.S1_at11/119+16940832..16942422expressed protein
LOC_Os09g27860Os.14554.1.S1_at10/119+16944130..16947027expressed protein
LOC_Os09g27870OsAffx.17940.1.S1_at9/119+16948492..16950743hypothetical protein
LOC_Os09g27880OsAffx.6421.1.S1_x_at11/119+16952726..16953814hypothetical protein
LOC_Os09g27890Os.50922.1.S1_at11/119+16957543..16961139LysM domain GPI-anchored protein 1 precursor, putative, expressed
LOC_Os09g27900Os.23773.1.A1_at11/119+16962592..16964809D-xylose-proton symporter, putative, expressed
LOC_Os09g27900Os.23773.2.S1_at2/119+16962592..16964809D-xylose-proton symporter, putative, expressed
LOC_Os09g27910Os.51676.1.S1_at11/119+16969179..16970670Eukaryotic aspartyl protease family protein, expressed
LOC_Os09g27920OsAffx.6422.1.S1_at11/119+16971342..16972288hypothetical protein
LOC_Os09g27930OsAffx.30103.4.S1_s_at11/119+16972783..16974635UBiQuitin family member, putative, expressed
LOC_Os09g27940Os.54580.1.S1_at11/119+16976481..16977927Eukaryotic aspartyl protease family protein, expressed
LOC_Os09g27950Os.23468.1.A1_at11/119+16979036..16982866Avr9 elicitor response protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016998biological_processcell wall catabolism
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50922.1.S1_at--802--9791Chr09:16960463..16960487 (25 bp)
TAACCACAGCACTCAAGCCTCAATG
LOC_Os09g27890
Os.50922.1.S1_at--949--9731Chr09:16960482..16960593 (25 bp)
TCAATGCCCAGGTCCGCATCAGTAT
LOC_Os09g27890
Os.50922.1.S1_at--1004--7191Chr09:16960617..16960641 (25 bp)
GTCGTCCTTCTTCGAGACGTACCTC
LOC_Os09g27890
Os.50922.1.S1_at--997--9111Chr09:16960796..16960820 (25 bp)
TGCTGTGGTAACAGAGCGGCTCTCG
LOC_Os09g27890
Os.50922.1.S1_at--413--9511Chr09:16960816..16960840 (25 bp)
TCTCGCCGTTGATGCTACATAATTT
LOC_Os09g27890
Os.50922.1.S1_at--469--7291Chr09:16960889..16960913 (25 bp)
GTGCCCAATTTTTGTTGCGTTCATT
LOC_Os09g27890
Os.50922.1.S1_at--654--9591Chr09:16960909..16960933 (25 bp)
TCATTCGATTTGTCTGCCACTCACT
LOC_Os09g27890
Os.50922.1.S1_at--725--131Chr09:16960954..16960978 (25 bp)
ATTACAGAAGCGCAGATCTCTCCAG
LOC_Os09g27890
Os.50922.1.S1_at--489--6931Chr09:16961031..16961055 (25 bp)
GTAGTGTGCTTTTTATCGACGCTTT
LOC_Os09g27890
Os.50922.1.S1_at--176--9931Chr09:16961057..16961081 (25 bp)
TACTGTACCTTCTACTACTGATATG
LOC_Os09g27890
Os.50922.1.S1_at--1067--6491Chr09:16961076..16961100 (25 bp)
GATATGCTTTTTAGGGCACCCACAA
LOC_Os09g27890
Target Sequence 
TAACCACAGCACTCAAGCCTCAATGCCCAGGTCCGCATCAGTATCCTCCGCTGATTCCGCCGCCGACGTCGTCCTTCTTC
GAGACGTACCTCGGCCCTTCGCCGACGCCGATGGCATCCGAAGGAGGCGTCATGGCCGGCATGGCGCCGACGAGCACCCC
GGCGGCGAGCTCCGGCCCTCCTCCGGCCGGCCGGCACGTCGTCGGCGACNTTCTTGGGGCGTTCGCTCTCTGCCTCGTCG
GCAACCTGCTGTGGTAACAGAGCGGCTCTCGCCGTTGATGCTACATAATTTTGTACAGAAGCTGTGGCCGGCTGTGTTTT
TGTCGGGCAGCGTCGGGTTGTGCCCAATTTTTGTTGCGTTCATTCGATTTGTCTGCCACTCACTCCTGTGGAATGGCAAA
CACAATTACAGAAGCGCAGATCTCTCCAGCGCGGCTGTAATGNTCCTGAATTCCTGATGCTATTGAGAATGTGAGTACCG
AGTAGTGTGCTTTTTATCGACGCTTTTTACTGTACCTTCTACTACTGATATGCTTTTTAGGGCACCCACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50922.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis