Browse Element(s) Details


OsAffx.30103.4.S1_s_at

Description tigr:9637.m02463
TID=OsAffx.30103.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Ribosomal L40e family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2793011/11UBiQuitin family member, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g27870OsAffx.17940.1.S1_at9/119+16948492..16950743hypothetical protein
LOC_Os09g27880OsAffx.6421.1.S1_x_at11/119+16952726..16953814hypothetical protein
LOC_Os09g27890Os.50922.1.S1_at11/119+16957543..16961139LysM domain GPI-anchored protein 1 precursor, putative, expressed
LOC_Os09g27900Os.23773.1.A1_at11/119+16962592..16964809D-xylose-proton symporter, putative, expressed
LOC_Os09g27900Os.23773.2.S1_at2/119+16962592..16964809D-xylose-proton symporter, putative, expressed
LOC_Os09g27910Os.51676.1.S1_at11/119+16969179..16970670Eukaryotic aspartyl protease family protein, expressed
LOC_Os09g27920OsAffx.6422.1.S1_at11/119+16971342..16972288hypothetical protein
LOC_Os09g27930OsAffx.30103.4.S1_s_at11/119+16972783..16974635UBiQuitin family member, putative, expressed
LOC_Os09g27940Os.54580.1.S1_at11/119+16976481..16977927Eukaryotic aspartyl protease family protein, expressed
LOC_Os09g27950Os.23468.1.A1_at11/119+16979036..16982866Avr9 elicitor response protein, putative, expressed
LOC_Os09g27960Os.9325.1.S1_at11/119+16987172..16989405Uncharacterised protein family containing protein, expressed
LOC_Os09g27960Os.9325.2.S1_at5/119+16987172..16989405Uncharacterised protein family containing protein, expressed
LOC_Os09g27970NANA9+16991505..16992747hypothetical protein
LOC_Os09g27980OsAffx.17941.2.S1_at10/119+16995554..16998348emp24/gp25L/p24 family protein, expressed
LOC_Os09g27990Os.8782.1.S1_at11/119+16998460..17000373Annexin family protein, expressed
LOC_Os09g27990Os.46749.1.S1_x_at11/119+16998460..17000373Annexin family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006464biological_processprotein modification
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0010224biological_processresponse to UV-B
GO:0016567biological_processprotein ubiquitination
GO:0042787biological_processprotein ubiquitination during ubiquitin-dependent protein catabolism
GO:0005622cellular_componentintracellular
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30103.4.S1_s_at--207--5971Chr09:16973983..16974007 (25 bp)
GAGAACAAGCTGGTTTGCCGCAGGT
LOC_Os09g27930
OsAffx.30103.4.S1_s_at--92--8591Chr09:16973993..16974139 (25 bp)
TGGTTTGCCGCAGGTGCTATGCACG
LOC_Os09g27930
OsAffx.30103.4.S1_s_at--222--1331Chr09:16974430..16974454 (25 bp)
AGAGGTTTATGTCCAAGCTTTCGAA
LOC_Os09g27930
OsAffx.30103.4.S1_s_at--256--7271Chr09:16974440..16974464 (25 bp)
GTCCAAGCTTTCGAAGTGAACCACT
LOC_Os09g27930
OsAffx.30103.4.S1_s_at--263--7351Chr09:16974455..16974479 (25 bp)
GTGAACCACTGGAAAGCTCCGTCGT
LOC_Os09g27930
OsAffx.30103.4.S1_s_at--14--5571Chr09:16974466..16974490 (25 bp)
GAAAGCTCCGTCGTGGATCAGTTCA
LOC_Os09g27930
OsAffx.30103.4.S1_s_at--197--8571Chr09:16974479..16974503 (25 bp)
TGGATCAGTTCAATCGACCGCCTTG
LOC_Os09g27930
OsAffx.30103.4.S1_s_at--1153--4431Chr09:16974498..16974522 (25 bp)
GCCTTGCAGCTTTTATACCTTCTTA
LOC_Os09g27930
OsAffx.30103.4.S1_s_at--1051--10171Chr09:16974511..16974535 (25 bp)
TATACCTTCTTATTAGTTACTTTGT
LOC_Os09g27930
OsAffx.30103.4.S1_s_at--837--6771Chr09:16974526..16974550 (25 bp)
GTTACTTTGTCTCTTCATGGAGAGA
LOC_Os09g27930
OsAffx.30103.4.S1_s_at--16--10271Chr09:16974563..16974587 (25 bp)
TTTGCTTTCAAGTTTCTGTTACTGG
LOC_Os09g27930
Target Sequence 
GAGAACAAGCTGGTTTGCCGCAGGTGCTATGCACGCCTTCCCCTCAGGTCCACCAACTGCCGCAAGAAGAAGTGTGGCCA
CAGCAATGAGATAAGGGCAAAGAAGAGGTTTATGTCCAAGCTTTCGAAGTGAACCACTGGAAAGCTCCGTCGTGGATCAG
TTCAATCGACCGCCTTGCAGCTTTTATACCTTCTTATTAGTTACTTTGTCTCTTCATGGAGAGATGCTTATGAGATTTTG
CTTTCAAGTTTCTGTTACTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30103.4.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis