Browse Element(s) Details


Os.51676.1.S1_at

Description gb:AK063358.1
DB_XREF= gi:32973376
TID=Os.51676.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51676 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-114-C09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-114-C09, full insert sequence.
FL= gb:AK063358.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2791011/11Eukaryotic aspartyl protease family protein, expressed
LOC_Os03g087901/11Eukaryotic aspartyl protease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g27860Os.14554.1.S1_at10/119+16944130..16947027expressed protein
LOC_Os09g27870OsAffx.17940.1.S1_at9/119+16948492..16950743hypothetical protein
LOC_Os09g27880OsAffx.6421.1.S1_x_at11/119+16952726..16953814hypothetical protein
LOC_Os09g27890Os.50922.1.S1_at11/119+16957543..16961139LysM domain GPI-anchored protein 1 precursor, putative, expressed
LOC_Os09g27900Os.23773.1.A1_at11/119+16962592..16964809D-xylose-proton symporter, putative, expressed
LOC_Os09g27900Os.23773.2.S1_at2/119+16962592..16964809D-xylose-proton symporter, putative, expressed
LOC_Os09g27910Os.51676.1.S1_at11/119+16969179..16970670Eukaryotic aspartyl protease family protein, expressed
LOC_Os09g27920OsAffx.6422.1.S1_at11/119+16971342..16972288hypothetical protein
LOC_Os09g27930OsAffx.30103.4.S1_s_at11/119+16972783..16974635UBiQuitin family member, putative, expressed
LOC_Os09g27940Os.54580.1.S1_at11/119+16976481..16977927Eukaryotic aspartyl protease family protein, expressed
LOC_Os09g27950Os.23468.1.A1_at11/119+16979036..16982866Avr9 elicitor response protein, putative, expressed
LOC_Os09g27960Os.9325.1.S1_at11/119+16987172..16989405Uncharacterised protein family containing protein, expressed
LOC_Os09g27960Os.9325.2.S1_at5/119+16987172..16989405Uncharacterised protein family containing protein, expressed
LOC_Os09g27970NANA9+16991505..16992747hypothetical protein
LOC_Os09g27980OsAffx.17941.2.S1_at10/119+16995554..16998348emp24/gp25L/p24 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51676.1.S1_at--959--10631Chr09:16970105..16970129 (25 bp)
TTCCTGAACATGACCGGCATCAGCG
LOC_Os09g27910
Os.51676.1.S1_at--103--5632Chr09:16970321..16970345 (25 bp)
GACACGTGCTTCAAGTGGCCGCCGC
LOC_Os09g27910
Os.51676.1.S1_at--488--4691Chr09:16970396..16970420 (25 bp)
GCGGACATGGAGCTGCCGCTGGAGA
LOC_Os09g27910
Os.51676.1.S1_at--903--491Chr09:16970492..16970516 (25 bp)
ATCGGGAGCTTCCAGCACCAGAACT
LOC_Os09g27910
Os.51676.1.S1_at--607--1511Chr09:16970505..16970529 (25 bp)
AGCACCAGAACTTCCACATGCTCTA
LOC_Os09g27910
Os.51676.1.S1_at--56--9171Chr09:16970563..16970587 (25 bp)
TGCGCCGTGCAACCTCAGCTAGCTA
LOC_Os09g27910
Os.51676.1.S1_at--755--5151Chr09:16970571..16970595 (25 bp)
GCAACCTCAGCTAGCTAGTCTCAAA
LOC_Os09g27910
Os.51676.1.S1_at--303--4871Chr09:16970584..16970608 (25 bp)
GCTAGTCTCAAATTTCTTTGTGTCG
LOC_Os09g27910
Os.51676.1.S1_at--1050--3111Chr09:16970594..16970618 (25 bp)
AATTTCTTTGTGTCGATTTGGTTCA
LOC_Os09g27910
Os.51676.1.S1_at--875--211Chr09:16970609..16970633 (25 bp)
ATTTGGTTCATGATCTGTGTGTATC
LOC_Os09g27910
Os.51676.1.S1_at--338--6412Chr09:16970620..16970644 (25 bp)
GATCTGTGTGTATCATGTAATGGAG
LOC_Os09g27910
Target Sequence 
TTCCTGAACATGACCGGCATCAGCGTCGCCGGCGACCTGCTGCCGATCGACCCGTCGGTGTTCGCCATCAACGAGACCGA
CGGCACGGGCGGGGTCATCATCGACTCCGGCACGACCGTCACGTTCCTGGCGCAGCCGGCGTACGCGATGGTGCAGGGGG
CGTTCGTGGCGTGGGTCGGGCTGCCCAGGGCGAACGCCACGCCGTCGGACACCTTCGACACGTGCTTCAAGTGGCCGCCG
CCGCCGCGCCGGATGGTGACGCTGCCGGAGATGGTGCTCCACTTCGACGGGGCGGACATGGAGCTGCCGCTGGAGAACTA
CATGGTGATGGACGGCGGCACCGGCAACCTGTGCCTGGCGATGCTGCCGTCGGACGACGGCTCCATCATCGGGAGCTTCC
AGCACCAGAACTTCCACATGCTCTACGACCTCGAGAACAGCCTCCTCTCCTTCGTCCCTGCGCCGTGCAACCTCAGCTAG
CTAGTCTCAAATTTCTTTGTGTCGATTTGGTTCATGATCTGTGTGTATCATGTAATGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51676.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis