Browse Element(s) Details


Os.23773.1.A1_at

Description gb:CB680834
DB_XREF= gi:29684559
DB_XREF=OSJNEf06E05.r
CLONE=OSJNEf06E05
TID=Os.23773.1
CNT=7
FEA=EST
TIER=ConsEnd
STK=4
UG=Os.23773 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_171996.1 (A.thaliana) putative sugar transporter protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2311011/11Sugar transporter family protein, expressed
LOC_Os09g2790011/11D-xylose-proton symporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g23100OsAffx.19542.3.S1_x_at8/119+13645494..13649716retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g23110Os.23773.2.S1_at11/119+13665710..13670255Sugar transporter family protein, expressed
LOC_Os09g23110Os.23773.1.A1_at11/119+13665710..13670255Sugar transporter family protein, expressed
LOC_Os09g23120NANA9+13671982..13677734retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g23130OsAffx.1647.1.S1_at1/119+13678419..13680897retrotransposon protein, putative, unclassified
LOC_Os09g23130OsAffx.20565.1.S1_at1/119+13678419..13680897retrotransposon protein, putative, unclassified
LOC_Os09g23140Os.52158.1.S1_at11/119+13687244..13689946Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2, putative, expressed
LOC_Os09g23150Os.1852.1.S1_at11/119+13694424..13698811hydrolase, alpha/beta fold family protein, expressed
LOC_Os09g23150OsAffx.15036.1.S1_s_at1/119+13694424..13698811hydrolase, alpha/beta fold family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23773.1.A1_at--1084--932Chr09:16964067..16964091 (25 bp)
AGGAATCATCATACCAGAGCTGAGT
LOC_Os09g27900
Os.23773.1.A1_at--179--6132Chr09:16964088..16964112 (25 bp)
GAGTGGTGCTCGGACACGCTCGAAA
LOC_Os09g27900
Os.23773.1.A1_at--40--5632Chr09:16964100..16964124 (25 bp)
GACACGCTCGAAAGTTATGGGCTTC
LOC_Os09g27900
Os.23773.1.A1_at--342--10432Chr09:16964114..16964138 (25 bp)
TTATGGGCTTCAGCTTCACTGTACA
LOC_Os09g27900
Os.23773.1.A1_at--76--4912Chr09:16964126..16964299 (25 bp)
GCTTCACTGTACATTGGATATGCAA
LOC_Os09g27900
Os.23773.1.A1_at--1144--5332Chr09:16964336..16964360 (25 bp)
GAAGTTAGGCGTTGGAGCCGTCTAT
LOC_Os09g27900
Os.23773.1.A1_at--658--1672Chr09:16964351..16964375 (25 bp)
AGCCGTCTATGCAGGTTTTGGTGGA
LOC_Os09g27900
Os.23773.1.A1_at--26--1492Chr09:16964390..16964414 (25 bp)
AGCACTTTTCGCCTACAATTTCATT
LOC_Os09g27900
Os.23773.1.A1_at--444--3832Chr09:16964467..16964491 (25 bp)
CTGCCCCTGGCAAGCGAGAGTGAGA
LOC_Os09g27900
Os.23773.1.A1_at--399--9772Chr09:16964587..16964611 (25 bp)
TAATGATCCAACCTGCTTGTCAGTG
LOC_Os09g27900
Os.23773.1.A1_at--527--2632Chr09:16964596..16964620 (25 bp)
AACCTGCTTGTCAGTGCATATAGTG
LOC_Os09g27900
Target Sequence 
AGGAATCATCATACCAGAGCTGAGTGGTGCTCGGACACGCTCGAAAGTTATGGGCTTCAGCTTCACTGTACATTGGATAT
GCAATTTTNTGGTGGGACTGTATTTCCTGGAGCTTGNGAAGAAGTTAGGCGTTGGAGCCGTCTATGCAGGTTTTGGTGGA
GTATCCTTNTTGTCAGCACTTTTCGCCTACAATTTCATTGTCGAGACGAAAGGACGTTNTNCTTGAGGAAATCGAAATGT
NTNTGAGCCCTGCTGCCCCTGGCAAGCGAGAGTGAGACACATTNTTTCATTCACTTACGCAGATGGANCAAGCATTCAAC
NGCTCCAAGGAGTTTTTNATCCATGGGGTACTGGAATTCCAGATTGTTGTTNTAATGATCCAACCTGCTTGTCAGTGCAT
ATAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23773.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis