Browse Element(s) Details


Os.1852.1.S1_at

Description gb:AF039531.1
DB_XREF= gi:2801535
GEN=LPL1
TID=Os.1852.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.1852 (NCBI UniGene Cluster)
DEF=Oryza sativa lysophospholipase homolog (LPL1) mRNA, complete cds.
PROD=lysophospholipase homolog
FL= gb:AF039531.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2315011/11hydrolase, alpha/beta fold family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g23110Os.23773.2.S1_at11/119+13665710..13670255Sugar transporter family protein, expressed
LOC_Os09g23110Os.23773.1.A1_at11/119+13665710..13670255Sugar transporter family protein, expressed
LOC_Os09g23120NANA9+13671982..13677734retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g23130OsAffx.1647.1.S1_at1/119+13678419..13680897retrotransposon protein, putative, unclassified
LOC_Os09g23130OsAffx.20565.1.S1_at1/119+13678419..13680897retrotransposon protein, putative, unclassified
LOC_Os09g23140Os.52158.1.S1_at11/119+13687244..13689946Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2, putative, expressed
LOC_Os09g23150Os.1852.1.S1_at11/119+13694424..13698811hydrolase, alpha/beta fold family protein, expressed
LOC_Os09g23150OsAffx.15036.1.S1_s_at1/119+13694424..13698811hydrolase, alpha/beta fold family protein, expressed
LOC_Os09g23160Os.7364.1.S1_at11/119+13705540..13710508Annexin family protein, expressed
LOC_Os09g23160OsAffx.18530.1.S1_at1/119+13705540..13710508Annexin family protein, expressed
LOC_Os09g23170OsAffx.29980.1.S1_at11/119+13711161..13712159hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1852.1.S1_at--1106--5591Chr09:13694901..13694925 (25 bp)
GAAATTCTTCGGATATCATCATATT
LOC_Os09g23150
Os.1852.1.S1_at--568--8071Chr09:13694802..13694826 (25 bp)
GGAGCATCTCAACGACTGTACCAAT
LOC_Os09g23150
Os.1852.1.S1_at--797--3251Chr09:13694793..13694817 (25 bp)
CAACGACTGTACCAATCATCAGCAT
LOC_Os09g23150
Os.1852.1.S1_at--356--4971Chr09:13694772..13694796 (25 bp)
GCATCAGCACATAAATCTATAAAAC
LOC_Os09g23150
Os.1852.1.S1_at--215--10491Chr09:13694673..13694697 (25 bp)
TTAAGCTCAAGACTTGATGTTCTCC
LOC_Os09g23150
Os.1852.1.S1_at--620--5231Chr09:13694634..13694658 (25 bp)
GAATCAGCTATATGGTGCTCCCACT
LOC_Os09g23150
Os.1852.1.S1_at--91--7311Chr09:13694620..13694644 (25 bp)
GTGCTCCCACTTATGTCAGATATTG
LOC_Os09g23150
Os.1852.1.S1_at--826--7111Chr09:13694606..13694630 (25 bp)
GTCAGATATTGGAACATGGTATAGA
LOC_Os09g23150
Os.1852.1.S1_at--513--71Chr09:13694547..13694571 (25 bp)
ATTGCTGCCTTTGCCTTTGTGTAGA
LOC_Os09g23150
Os.1852.1.S1_at--330--4451Chr09:13694541..13694565 (25 bp)
GCCTTTGCCTTTGTGTAGATGGTTT
LOC_Os09g23150
Os.1852.1.S1_at--681--5511Chr09:13694442..13694466 (25 bp)
GAAAATCATGTACTTCATTATGGTA
LOC_Os09g23150
Target Sequence 
GAAATTCTTCGGATATCATCATATTTGCAAAGAAACTTAAGCAGAGTAACTGTCCCTTTTTTAGTTCTGCATGGCACAGC
TGACACAATAACTGACCCCGGAGCATCTCAACGACTGTACCAATCATCAGCATCAGCACATAAATCTATAAAACTGTATG
ATGGATATTTACATGATCTTCTCTTTGAACCTGAAAGGGATGATATAGCAAATGACATCATCAATTGGTTAAGCTCAAGA
CTTGATGTTCTCCAGAGATGGTGAAGTGAATCAGCTATATGGTGCTCCCACTTATGTCAGATATTGGAACATGGTATAGA
AGAGAAAGGCTAATTGTAAAACATTTTGTTTTAGATTGCTGCCTTTGCCTTTGTGTAGATGGTTTTTGTTTAGTTATTTC
AATCATGGTGGGAAATTAACCCACCTGAGATGTAAGTAGTGCAAGATTAGAGTCATGTTGAAAATCATGTACTTCATTAT
GGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1852.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis