Browse Element(s) Details


Os.52158.1.S1_at

Description gb:AK065379.1
DB_XREF= gi:32975397
TID=Os.52158.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52158 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013012D06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013012D06, full insert sequence.
FL= gb:AK065379.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2314011/11Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g23110Os.23773.2.S1_at11/119+13665710..13670255Sugar transporter family protein, expressed
LOC_Os09g23110Os.23773.1.A1_at11/119+13665710..13670255Sugar transporter family protein, expressed
LOC_Os09g23120NANA9+13671982..13677734retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g23130OsAffx.1647.1.S1_at1/119+13678419..13680897retrotransposon protein, putative, unclassified
LOC_Os09g23130OsAffx.20565.1.S1_at1/119+13678419..13680897retrotransposon protein, putative, unclassified
LOC_Os09g23140Os.52158.1.S1_at11/119+13687244..13689946Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2, putative, expressed
LOC_Os09g23150Os.1852.1.S1_at11/119+13694424..13698811hydrolase, alpha/beta fold family protein, expressed
LOC_Os09g23150OsAffx.15036.1.S1_s_at1/119+13694424..13698811hydrolase, alpha/beta fold family protein, expressed
LOC_Os09g23160Os.7364.1.S1_at11/119+13705540..13710508Annexin family protein, expressed
LOC_Os09g23160OsAffx.18530.1.S1_at1/119+13705540..13710508Annexin family protein, expressed
LOC_Os09g23170OsAffx.29980.1.S1_at11/119+13711161..13712159hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52158.1.S1_at--935--10551Chr09:13687794..13687818 (25 bp)
TTCTTTGGCGCGGTAAGGGCCTGAA
LOC_Os09g23140
Os.52158.1.S1_at--1090--651Chr09:13687751..13687775 (25 bp)
ATGCAACTACAGGTTGTCCGACCAC
LOC_Os09g23140
Os.52158.1.S1_at--179--3931Chr09:13687726..13687750 (25 bp)
CGGCCGGTGAGAGCAGTTTTCCATG
LOC_Os09g23140
Os.52158.1.S1_at--976--6791Chr09:13687711..13687735 (25 bp)
GTTTTCCATGCCGAATGTGTGATCA
LOC_Os09g23140
Os.52158.1.S1_at--578--6591Chr09:13687675..13687699 (25 bp)
GATTGCGCGTGTGGCTGTATTGCTC
LOC_Os09g23140
Os.52158.1.S1_at--772--6871Chr09:13687659..13687683 (25 bp)
GTATTGCTCTCAGCTCTTCGAGTGA
LOC_Os09g23140
Os.52158.1.S1_at--182--931Chr09:13687620..13687644 (25 bp)
AGGAGGATACGTGCCATTTAACCAA
LOC_Os09g23140
Os.52158.1.S1_at--774--5711Chr09:13687553..13687577 (25 bp)
GACTCGATCATGATTCACGGCAATT
LOC_Os09g23140
Os.52158.1.S1_at--118--10491Chr09:13687398..13687422 (25 bp)
TTAACTCTGACCGAGGTTGCACAAA
LOC_Os09g23140
Os.52158.1.S1_at--678--8951Chr09:13687332..13687356 (25 bp)
TGAACTTGTCCTCCGGGTTAATTTG
LOC_Os09g23140
Os.52158.1.S1_at--1141--3111Chr09:13687313..13687337 (25 bp)
AATTTGTTTCCTCGATCATCTCTTT
LOC_Os09g23140
Target Sequence 
TTCTTTGGCGCGGTAAGGGCCTGAAGCAAATCCAATACGACACATGCAACTACAGGTTGTCCGACCACCGGCCGGTGAGA
GCAGTTTTCCATGCCGAATGTGTGATCAGAGGAGATGCAGATTGCGCGTGTGGCTGTATTGCTCTCAGCTCTTCGAGTGA
GTGACAAATGGTCTAGGAGGATACGTGCCATTTAACCAAAGATTTACTCATGAGGGCATGACTGCCAATCTGAAACTGAA
CGACTCGATCATGATTCACGGCAATTTACCTGTGGATCCGGGATGGATTTTCAGGTGTGAAATCTGCCGATTTTTAGAAT
CTTGAATGGTAACTGGAGGCTGGAATGACAGGAATGCTCAATTGGAACTAGAAGCGTTTAATGGTCTTCTCTTTTTTTAA
CTCTGACCGAGGTTGCACAAATGCTCATTGTTCTTTAAATTTATTGATGGAGCTTTCTCATTTGAACTTGTCCTCCGGGT
TAATTTGTTTCCTCGATCATCTCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52158.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis