Browse Element(s) Details


OsAffx.29980.1.S1_at

Description tigr:9637.m01974
TID=OsAffx.29980.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2317011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g23140Os.52158.1.S1_at11/119+13687244..13689946Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2, putative, expressed
LOC_Os09g23150Os.1852.1.S1_at11/119+13694424..13698811hydrolase, alpha/beta fold family protein, expressed
LOC_Os09g23150OsAffx.15036.1.S1_s_at1/119+13694424..13698811hydrolase, alpha/beta fold family protein, expressed
LOC_Os09g23160Os.7364.1.S1_at11/119+13705540..13710508Annexin family protein, expressed
LOC_Os09g23160OsAffx.18530.1.S1_at1/119+13705540..13710508Annexin family protein, expressed
LOC_Os09g23170OsAffx.29980.1.S1_at11/119+13711161..13712159hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29980.1.S1_at--907--9251Chr09:13711916..13712026 (25 bp)
TCCTCGTCGCATCGGTCGGATCGGT
LOC_Os09g23170
OsAffx.29980.1.S1_at--500--4971Chr09:13711908..13712018 (25 bp)
GCATCGGTCGGATCGGTGGCGCTCG
LOC_Os09g23170
OsAffx.29980.1.S1_at--442--4571Chr09:13711760..13711784 (25 bp)
GCGCGTTGTCGGTCGCCGTCTTCGT
LOC_Os09g23170
OsAffx.29980.1.S1_at--624--7231Chr09:13711708..13711731 (24 bp)
GTCGCCATCACGATCGCCACTGGTT
LOC_Os09g23170
OsAffx.29980.1.S1_at--381--391Chr09:13711220..13711725 (25 bp)
ATCACGATCGCCACTGGTTGGGCTG
LOC_Os09g23170
OsAffx.29980.1.S1_at--277--1891Chr09:13711217..13711722 (25 bp)
ACGATCGCCACTGGTTGGGCTGCAT
LOC_Os09g23170
OsAffx.29980.1.S1_at--103--6391Chr09:13711215..13711720 (25 bp)
GATCGCCACTGGTTGGGCTGCATTA
LOC_Os09g23170
OsAffx.29980.1.S1_at--122--9331Chr09:13711213..13711718 (25 bp)
TCGCCACTGGTTGGGCTGCATTATT
LOC_Os09g23170
OsAffx.29980.1.S1_at--541--3331Chr09:13711209..13711229 (21 bp)
CACTGGTTGGGCTGCATTATTTTGG
LOC_Os09g23170
OsAffx.29980.1.S1_at--821--8651Chr09:13711202..13711226 (25 bp)
TGGGCTGCATTATTTTGGATTATTT
LOC_Os09g23170
OsAffx.29980.1.S1_at--780--8331Chr09:13711200..13711224 (25 bp)
GGCTGCATTATTTTGGATTATTTGG
LOC_Os09g23170
Target Sequence 
TCCTCGTCGCATCGGTCGGATCGGTGGCGCTCGCGGCGCTGACGGTGCTCCTGGTCGCCGCGTTCGTCCTCGTCGCGGCG
GCGACGAGCGCCGCCGCCGTCGCGGCCGTCGTCTCCCTGGCGGCGCTGTCCGCTCTCCTCGCCGTGGCGTACGTCGGCGC
GTTGTCGGTCGCCGTCTTCGTCGTGGCGGCCACGACGGCGGCGACTGTCGTCGCCATCACGATCGCCACTGGTTGGGCTG
CATTATTTTGGATTATTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29980.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis