Browse Element(s) Details


Os.14554.1.S1_at

Description gb:AK109302.1
DB_XREF= gi:32994511
TID=Os.14554.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14554 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-188-E01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-188-E01, full insert sequence.
FL= gb:AK109302.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2786010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g27810NANA9+16918029..16922578retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g27820Os.12201.2.S1_at11/119+16924456..169260451-aminocyclopropane-1-carboxylate oxidase 1, putative, expressed
LOC_Os09g27830Os.6625.1.S1_x_at10/119+16929986..16934951protein disulfide-isomerase domain containing protein, expressed
LOC_Os09g27840OsAffx.6420.1.S1_at11/119+16937030..16938500transposon protein, putative, unclassified
LOC_Os09g27850Os.319.1.S1_at11/119+16940832..16942422expressed protein
LOC_Os09g27860Os.14554.1.S1_at10/119+16944130..16947027expressed protein
LOC_Os09g27870OsAffx.17940.1.S1_at9/119+16948492..16950743hypothetical protein
LOC_Os09g27880OsAffx.6421.1.S1_x_at11/119+16952726..16953814hypothetical protein
LOC_Os09g27890Os.50922.1.S1_at11/119+16957543..16961139LysM domain GPI-anchored protein 1 precursor, putative, expressed
LOC_Os09g27900Os.23773.1.A1_at11/119+16962592..16964809D-xylose-proton symporter, putative, expressed
LOC_Os09g27900Os.23773.2.S1_at2/119+16962592..16964809D-xylose-proton symporter, putative, expressed
LOC_Os09g27910Os.51676.1.S1_at11/119+16969179..16970670Eukaryotic aspartyl protease family protein, expressed
LOC_Os09g27920OsAffx.6422.1.S1_at11/119+16971342..16972288hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14554.1.S1_at--1047--3651Chr09:16944688..16944712 (25 bp)
CTTCAGTGAAGCCTCATTCTGTGGA
LOC_Os09g27860
Os.14554.1.S1_at--855--10591Chr09:16944672..16944696 (25 bp)
TTCTGTGGACCCTGTACATACTTAC
LOC_Os09g27860
Os.14554.1.S1_at--798--8371Chr09:16944640..16944664 (25 bp)
GGCGACTTTTATTCCGGAGTTCACT
LOC_Os09g27860
Os.14554.1.S1_at--743--6651Chr09:16944543..16944567 (25 bp)
GTTGATGGCATCTGTTTGGCACGAA
LOC_Os09g27860
Os.14554.1.S1_at--516--8251Chr09:16944526..16944550 (25 bp)
GGCACGAAGGTCCTCATGGAGCTAT
LOC_Os09g27860
Os.14554.1.S1_at--255--5491Chr09:16944486..16944510 (25 bp)
GAACTTGGCTGATCCATGATCTCAA
LOC_Os09g27860
Os.14554.1.S1_at--151--4751Chr09:16944399..16944423 (25 bp)
GCTGATCCATCATGTGTGACCTGAC
LOC_Os09g27860
Os.14554.1.S1_at--398--6371Chr09:16944305..16944329 (25 bp)
GATCCTATCCTATGCTGCCATGAAT
LOC_Os09g27860
Os.14554.1.S1_at--70--671Chr09:16944185..16944209 (25 bp)
ATGAATTGATCCTGTGCATCCCTTT
LOC_Os09g27860
Os.14554.1.S1_at--779--4971Chr09:16944170..16944194 (25 bp)
GCATCCCTTTTGCACTGTATTGACA
LOC_Os09g27860
Os.14554.1.S1_at--495--2291Chr09:16944130..16944154 (25 bp)
AAATGCAGAGTTCACTTGCTCCTGT
NONE
Target Sequence 
CTTCAGTGAAGCCTCATTCTGTGGACCCTGTACATACTTACAGATGGAGGCGACTTTTATTCCGGAGTTCACTGCNAAGA
TATGATCTGTGCAACGAGTTCACCAATGGTGCNGGAGGNTTTTGTATGTTATGTTNCAGTTTGAGGAGTTGATGGCATCT
GTTTGGCACGAAGGTCCTCATGGAGCTATGCAAATCAATGAAATGAACTTGGCTGATCCATGATCTCAACCTCACTGAAA
TGTGAGAATATCTTATGCTGTTCTCGCAATGGGGTCAGTGATTTGAGCCATGCTGATCCATCATGTGTGACCTGACACAG
AAAGATATAGCTTTTTTAGTTTTCTGTTCTTGAGGGAATATTTGTCACCATCTTCAGAAGAAACAGATCCTATCCTATGC
TGCCATGAATTCAAGAAACCTGGTCNAATTGTGGGTGGAATGTGGAATGGCGTTGAAGGCTTTTGTTGATACTATCTCAT
TGTAGTCCCCCCTTTGTGTCGTGTGATGAATTGATCCTGTGCATCCCTTTTGCACTGTATTGACATTACATTCTATTCGG
AAATGCAGAGTTCACTTGCTCCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14554.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis