Browse Element(s) Details


Os.6625.1.S1_x_at

Description gb:AK072941.1
DB_XREF= gi:32982964
TID=Os.6625.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6625 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023150F04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023150F04, full insert sequence.
FL= gb:AK072941.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2783010/11protein disulfide-isomerase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g27789NANA9+16907262..16907946NA
LOC_Os09g27800OsAffx.31069.1.S1_x_at1/119+16912698..16917173retrotransposon protein, putative, unclassified
LOC_Os09g27800OsAffx.17106.1.S1_x_at1/119+16912698..16917173retrotransposon protein, putative, unclassified
LOC_Os09g27810NANA9+16918029..16922578retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g27820Os.12201.2.S1_at11/119+16924456..169260451-aminocyclopropane-1-carboxylate oxidase 1, putative, expressed
LOC_Os09g27830Os.6625.1.S1_x_at10/119+16929986..16934951protein disulfide-isomerase domain containing protein, expressed
LOC_Os09g27840OsAffx.6420.1.S1_at11/119+16937030..16938500transposon protein, putative, unclassified
LOC_Os09g27850Os.319.1.S1_at11/119+16940832..16942422expressed protein
LOC_Os09g27860Os.14554.1.S1_at10/119+16944130..16947027expressed protein
LOC_Os09g27870OsAffx.17940.1.S1_at9/119+16948492..16950743hypothetical protein
LOC_Os09g27880OsAffx.6421.1.S1_x_at11/119+16952726..16953814hypothetical protein
LOC_Os09g27890Os.50922.1.S1_at11/119+16957543..16961139LysM domain GPI-anchored protein 1 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0003756molecular_functionprotein disulfide isomerase activity
GO:0005489molecular_functionelectron transporter activity
GO:0030508molecular_functionthiol-disulfide exchange intermediate activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6625.1.S1_x_at--590--9071Chr09:16933770..16933794 (25 bp)
TGCTTTGTATCTTTCCTTCCAGATA
LOC_Os09g27830
Os.6625.1.S1_x_at--1108--5891Chr09:16933833..16933857 (25 bp)
GAGCTGCTATTATCTGTTGCTGAGA
LOC_Os09g27830
Os.6625.1.S1_x_at--321--10151NONE
TATCCAGCGATGGTTGCTCACAACG
NONE
Os.6625.1.S1_x_at--810--2411Chr09:16934377..16934401 (25 bp)
AAAAAAGGCGCATATGCTCCACTCC
LOC_Os09g27830
Os.6625.1.S1_x_at--71--4251Chr09:16934400..16934424 (25 bp)
CCGTAGTGCTTTCCAGCTTGATGAA
LOC_Os09g27830
Os.6625.1.S1_x_at--654--6971Chr09:16934565..16934589 (25 bp)
GTACCCCAACGATAGTCCAATCTGA
LOC_Os09g27830
Os.6625.1.S1_x_at--348--5351Chr09:16934621..16934645 (25 bp)
GAAGAGGACGAATTCTCCCTTGAGG
LOC_Os09g27830
Os.6625.1.S1_x_at--786--9311Chr09:16934636..16934660 (25 bp)
TCCCTTGAGGAGCTGATGGCCGACA
LOC_Os09g27830
Os.6625.1.S1_x_at--568--871Chr09:16934651..16934675 (25 bp)
ATGGCCGACAACTCTCCAGTAAATG
LOC_Os09g27830
Os.6625.1.S1_x_at--594--3011Chr09:16934749..16934773 (25 bp)
AATGCTTCACTCGTGTCAACTGTAC
LOC_Os09g27830
Os.6625.1.S1_x_at--292--5271Chr09:16934796..16934820 (25 bp)
GAATGCTCCTTTGGTGTTATTACAG
LOC_Os09g27830
Target Sequence 
TGCTTTGTATCTTTCCTTCCAGATATCTTGGATTCAAAGGCCGAAGGAAGAAACAAGTACCTTGAGCTGCTATTATCTGT
TGCTGAGAAATTTAAAAAGAGTCCATACAGTTTTGTCTGGACAGCTGCTGGGAAGCAAGCTGATCTTGAGAAGCAAGTTG
GAGTTGGTGGTTATGGCTATCCAGCGATGGTTGCTCACAACGTGAAAAAAGGCGCATATGCTCCACTCCGTAGTGCTTTC
CAGCTTGATGAAATAACTGAGTTTGTGAAGGAAGCAGGGCGCGGTGGGAAGGGTAATCTTCCTTTGGACGGTACCCCAAC
GATAGTCCAATCTGAACCATGGGACGGCAAAGATGGTGAGGTTATTGAAGAGGACGAATTCTCCCTTGAGGAGCTGATGG
CCGACAACTCTCCAGTAAATGACGAGTTGTGATTCTGATAATTCCGGAAATGATGTTAGAGTTGATTAGCCAGACTGTAA
ATCTGAGTAACACTAATGCTTCACTCGTGTCAACTGTACAATTTGGGCGGGACAATTTTCAGAATGCTCCTTTGGTGTTA
TTACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6625.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis