Browse Element(s) Details


Os.46749.1.S1_x_at

Description gb:AK121859.1
DB_XREF= gi:37991482
TID=Os.46749.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46749 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033102I24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033102I24, full insert sequence.
FL= gb:AK121859.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2799011/11Annexin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g27930OsAffx.30103.4.S1_s_at11/119+16972783..16974635UBiQuitin family member, putative, expressed
LOC_Os09g27940Os.54580.1.S1_at11/119+16976481..16977927Eukaryotic aspartyl protease family protein, expressed
LOC_Os09g27950Os.23468.1.A1_at11/119+16979036..16982866Avr9 elicitor response protein, putative, expressed
LOC_Os09g27960Os.9325.1.S1_at11/119+16987172..16989405Uncharacterised protein family containing protein, expressed
LOC_Os09g27960Os.9325.2.S1_at5/119+16987172..16989405Uncharacterised protein family containing protein, expressed
LOC_Os09g27970NANA9+16991505..16992747hypothetical protein
LOC_Os09g27980OsAffx.17941.2.S1_at10/119+16995554..16998348emp24/gp25L/p24 family protein, expressed
LOC_Os09g27990Os.8782.1.S1_at11/119+16998460..17000373Annexin family protein, expressed
LOC_Os09g27990Os.46749.1.S1_x_at11/119+16998460..17000373Annexin family protein, expressed
LOC_Os09g28000Os.27824.1.S1_at11/119+17002039..17004693signal peptidase I family protein, expressed
LOC_Os09g28000OsAffx.12450.2.S1_x_at1/119+17002039..17004693signal peptidase I family protein, expressed
LOC_Os09g28019Os.16158.1.S1_at11/119+17007755..17013359nucleoporin, putative, expressed
LOC_Os09g28040Os.24721.1.S1_at9/119+17014449..17018852prolyl oligopeptidase family protein, expressed
LOC_Os09g28040OsAffx.5632.1.S1_x_at2/119+17014449..17018852prolyl oligopeptidase family protein, expressed
LOC_Os09g28040OsAffx.5632.1.S1_at2/119+17014449..17018852prolyl oligopeptidase family protein, expressed
LOC_Os09g28050Os.11703.1.S1_at11/119+17023574..17027545aminotransferase, classes I and II family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006979biological_processresponse to oxidative stress
GO:0015774biological_processpolysaccharide transport
GO:0009928cellular_componentcell surface (sensu Magnoliophyta)
GO:0005509molecular_functioncalcium ion binding
GO:0005544molecular_functioncalcium-dependent phospholipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46749.1.S1_x_at--107--7231Chr09:16999255..16999279 (25 bp)
GTCGACGAGGCTGTCATTCTTGAGA
LOC_Os09g27990
Os.46749.1.S1_x_at--36--1591Chr09:16999206..16999230 (25 bp)
AGCTCAGGCTAGCATTCTGCAGTTA
LOC_Os09g27990
Os.46749.1.S1_x_at--882--7591Chr09:16999021..16999192 (25 bp)
GGGCATGACTACACCAAGGCACTGA
LOC_Os09g27990
Os.46749.1.S1_x_at--479--8291Chr09:16998988..16999012 (25 bp)
GGCTTCGGTGAGTTTGAACAATCTT
LOC_Os09g27990
Os.46749.1.S1_x_at--691--7351Chr09:16998952..16998976 (25 bp)
GTGAAGTGCATCTACAATCCTTCCA
LOC_Os09g27990
Os.46749.1.S1_x_at--467--9491Chr09:16998836..16998945 (25 bp)
TCTCCAAGCTGCTGCATAGAAGTCT
LOC_Os09g27990
Os.46749.1.S1_x_at--554--5331Chr09:16998818..16998842 (25 bp)
GAAGTCTGCAATGCTCAGCGACCAA
LOC_Os09g27990
Os.46749.1.S1_x_at--975--2871Chr09:16998778..16998802 (25 bp)
AAGGGCTATTTTGGGCAGTGACGAT
LOC_Os09g27990
Os.46749.1.S1_x_at--122--10551Chr09:16998693..16998717 (25 bp)
TTCATCCTTGAAAGCTTGCCTGAGA
LOC_Os09g27990
Os.46749.1.S1_x_at--381--5971Chr09:16998659..16998683 (25 bp)
GAGACTTTCTTTTAGGTGCGGCCAA
LOC_Os09g27990
Os.46749.1.S1_x_at--41--7091Chr09:16998631..16998655 (25 bp)
GTCAAGGGCCTCATGAAGTCTGTGG
LOC_Os09g27990
Target Sequence 
GTCGACGAGGCTGTCATTCTTGAGATGTTCAGCAAGAGGAGCATCCCACAGCTCAGGCTAGCATTCTGCAGTTACAAGCA
CATATATGGGCATGACTACACCAAGGCACTGAAGAAAAATGGCTTCGGTGAGTTTGAACAATCTTTGAGGGTTGTTGTGA
AGTGCATCTACAATCCTTCCATGTATTTCTCCAAGCTGCTGCATAGAAGTCTGCAATGCTCAGCGACCAATAAAAGGTTG
GTTACAAGGGCTATTTTGGGCAGTGACGATGTCGATATGGACAAGATCAAGTCAGTGTTCAAAAGTAGTTATGGAAAGGA
CCTTGAGGATTTCATCCTTGAAAGCTTGCCTGAGAATGATTACAGAGACTTTCTTTTAGGTGCGGCCAAGGGGTCAAGGG
CCTCATGAAGTCTGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46749.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis