Browse Element(s) Details


OsAffx.12450.2.S1_x_at

Description tigr:9629.m06702
TID=OsAffx.12450.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Lipase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6745011/11Lipase family protein
LOC_Os09g280001/11signal peptidase I family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67430OsAffx.12450.1.S1_x_at11/111+39504018..39505325lipase class 3 family protein, putative
LOC_Os01g67440NANA1+39506618..39506914transposon protein, putative, unclassified
LOC_Os01g67450OsAffx.12450.2.S1_x_at11/111+39522538..39523821Lipase family protein
LOC_Os01g67459NANA1+39531454..39531706NA
LOC_Os01g67468NANA1+39533959..39534768NA
LOC_Os01g67480Os.50489.1.S1_at11/111+39538156..39543454Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g67480Os.12030.1.S1_at11/111+39538156..39543454Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g67490OsAffx.23959.2.S1_at11/111+39543428..39546305OTU-like cysteine protease family protein, expressed
LOC_Os01g67490Os.26271.1.A1_s_at11/111+39543428..39546305OTU-like cysteine protease family protein, expressed
LOC_Os01g67490Os.42585.1.S1_at10/111+39543428..39546305OTU-like cysteine protease family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0006629biological_processlipid metabolism
GO:0016020cellular_componentmembrane
GO:0004806molecular_functiontriacylglycerol lipase activity
GO:0008233molecular_functionpeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12450.2.S1_x_at--816--9091Chr01:39523361..39523385 (25 bp)
TGCTCCTGGCGTACGACCTCGCGGA
LOC_Os01g67450
OsAffx.12450.2.S1_x_at--609--8971Chr01:39523484..39523508 (25 bp)
TGAAGGTCCTCCGCGTGGCGAACGC
LOC_Os01g67450
OsAffx.12450.2.S1_x_at--901--3951Chr01:39523517..39523541 (25 bp)
CGGTGACGAAGCTCCCGGGCGTCTT
LOC_Os01g67450
OsAffx.12450.2.S1_x_at--1101--7131Chr01:39523537..39523561 (25 bp)
GTCTTCCTCAACGAGGCGACGACGA
LOC_Os01g67450
OsAffx.12450.2.S1_x_at--150--971Chr01:39523613..39523637 (25 bp)
AGGAGCTCGCCCTCGACTTCGTCAA
LOC_Os01g67450
OsAffx.12450.2.S1_x_at--812--9431Chr01:39523667..39523691 (25 bp)
TCGGATCCTACGTCGCGTCGCTCAG
LOC_Os01g67450
OsAffx.12450.2.S1_x_at--621--9251Chr01:39523672..39523696 (25 bp)
TCCTACGTCGCGTCGCTCAGGGAAG
LOC_Os01g67450
OsAffx.12450.2.S1_x_at--364--4272Chr01:39523724..39523748 (25 bp)
CCGGCGGCGTTCTCGCCATGGCGAT
LOC_Os01g67450
OsAffx.12450.2.S1_x_at--336--9511Chr01:39523734..39523758 (25 bp)
TCTCGCCATGGCGATGGAGCTCGTC
LOC_Os01g67450
OsAffx.12450.2.S1_x_at--62--4631Chr01:39523744..39523768 (25 bp)
GCGATGGAGCTCGTCGGGAGGCAAT
LOC_Os01g67450
OsAffx.12450.2.S1_x_at--1086--2951Chr01:39523766..39523790 (25 bp)
AATGGCAGTCGAAGGACGCAGCCAG
LOC_Os01g67450
Target Sequence 
TGCTCCTGGCGTACGACCTCGCGGAGCTCGGCGTCGCCGGCGGCGCCCCGGTCACCGTCTTCTCCTACGGCGGGCCGAGG
GTGGGGAACGCGGCGTTCAAGGCGCGCTGCGACGAGCTCGGCGTGAAGGTCCTCCGCGTGGCGAACGCGCGCGACCCGGT
GACGAAGCTCCCGGGCGTCTTCCTCAACGAGGCGACGACGAGGTCGGGGCCGCTCGCCGCCATGCGCGGCGCGTGCTACG
TGCACGTCGGCGAGGAGCTCGCCCTCGACTTCGTCAACCTCGGCGACCTCGCCAGCGTCCACGACCTCGGATCCTACGTC
GCGTCGCTCAGGGAAGGGGTGGTCACCGACGCCGAGGCGGCCACCGGCGGCGTTCTCGCCATGGCGATGGAGCTCGTCGG
GAGGCAATGGCAGTCGAAGGACGCAGCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12450.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis