Browse Element(s) Details


Os.42585.1.S1_at

Description gb:NM_190310.1
DB_XREF= gi:34907703
GEN=P0035F12.12
TID=Os.42585.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.42585 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0035F12.12 (P0035F12.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0035F12.12 (P0035F12.12), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6749010/11OTU-like cysteine protease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67450OsAffx.12450.2.S1_x_at11/111+39522538..39523821Lipase family protein
LOC_Os01g67459NANA1+39531454..39531706NA
LOC_Os01g67468NANA1+39533959..39534768NA
LOC_Os01g67480Os.50489.1.S1_at11/111+39538156..39543454Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g67480Os.12030.1.S1_at11/111+39538156..39543454Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g67490OsAffx.23959.2.S1_at11/111+39543428..39546305OTU-like cysteine protease family protein, expressed
LOC_Os01g67490Os.26271.1.A1_s_at11/111+39543428..39546305OTU-like cysteine protease family protein, expressed
LOC_Os01g67490Os.42585.1.S1_at10/111+39543428..39546305OTU-like cysteine protease family protein, expressed
LOC_Os01g67500Os.8271.1.S1_a_at11/111+39549117..39553422armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os01g67500Os.8271.1.S1_at11/111+39549117..39553422armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os01g67500Os.8271.2.S1_x_at7/111+39549117..39553422armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os01g67510Os.18205.1.S1_at10/111+39565700..39570792Protein recA, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008234molecular_functioncysteine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.42585.1.S1_at--601--6991Chr01:39545441..39545465 (25 bp)
GTACGTGACGCCGATCGCGAAATGA
LOC_Os01g67490
Os.42585.1.S1_at--543--4591Chr01:39545425..39545449 (25 bp)
GCGAAATGATGCGATGCCCGGCTCC
LOC_Os01g67490
Os.42585.1.S1_at--21--611Chr01:39545412..39545436 (25 bp)
ATGCCCGGCTCCTGTTTTGATTGAT
LOC_Os01g67490
Os.42585.1.S1_at--1076--6791Chr01:39545399..39545423 (25 bp)
GTTTTGATTGATCCCCTTGGATCCT
LOC_Os01g67490
Os.42585.1.S1_at--888--4171Chr01:39545386..39545410 (25 bp)
CCCTTGGATCCTTGATTGCCTTGAT
LOC_Os01g67490
Os.42585.1.S1_at--616--10791Chr01:39545375..39545399 (25 bp)
TTGATTGCCTTGATCTTTCCTCTTA
LOC_Os01g67490
Os.42585.1.S1_at--443--8831Chr01:39545365..39545389 (25 bp)
TGATCTTTCCTCTTACCTCTTTCTT
LOC_Os01g67490
Os.42585.1.S1_at--116--3771Chr01:39545356..39545380 (25 bp)
CTCTTACCTCTTTCTTGTTCTTCTC
LOC_Os01g67490
Os.42585.1.S1_at--615--9571Chr01:39545338..39545362 (25 bp)
TCTTCTCCTGTTGGGTTCTTTATTT
LOC_Os01g67490
Os.42585.1.S1_at--472--10211NONE
TATTTTCTTGGAATTACAGGCGATG
NONE
Os.42585.1.S1_at--874--4911Chr01:39544609..39544633 (25 bp)
GCTTCGATCGAAAGTGATTGTTCAA
LOC_Os01g67490
Target Sequence 
GTACGTGACGCCGATCGCGAAATGATGCGATGCCCGGCTCCTGTTTTGATTGATCCCCTTGGATCCTTGATTGCCTTGAT
CTTTCCTCTTACCTCTTTCTTGTTCTTCTCCTGTTGGGTTCTTTATTTTCTTGGAATTACAGGCGATGGGAGATGCCTCT
TTAGGTCTGTTGCGTACGGTGCCTGCTTAAGGAGAGGAAAGCAGTCGCCAAGCGATAGCATCCAGAAGGAGCTTGCCGAT
GAGCTTCGATCGAAAGTGATTGTTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.42585.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis