Browse Element(s) Details


Os.16158.1.S1_at

Description gb:AK103120.1
DB_XREF= gi:32988329
TID=Os.16158.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16158 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033119I02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033119I02, full insert sequence.
FL= gb:AK103120.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2801911/11nucleoporin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g27950Os.23468.1.A1_at11/119+16979036..16982866Avr9 elicitor response protein, putative, expressed
LOC_Os09g27960Os.9325.1.S1_at11/119+16987172..16989405Uncharacterised protein family containing protein, expressed
LOC_Os09g27960Os.9325.2.S1_at5/119+16987172..16989405Uncharacterised protein family containing protein, expressed
LOC_Os09g27970NANA9+16991505..16992747hypothetical protein
LOC_Os09g27980OsAffx.17941.2.S1_at10/119+16995554..16998348emp24/gp25L/p24 family protein, expressed
LOC_Os09g27990Os.8782.1.S1_at11/119+16998460..17000373Annexin family protein, expressed
LOC_Os09g27990Os.46749.1.S1_x_at11/119+16998460..17000373Annexin family protein, expressed
LOC_Os09g28000Os.27824.1.S1_at11/119+17002039..17004693signal peptidase I family protein, expressed
LOC_Os09g28000OsAffx.12450.2.S1_x_at1/119+17002039..17004693signal peptidase I family protein, expressed
LOC_Os09g28019Os.16158.1.S1_at11/119+17007755..17013359nucleoporin, putative, expressed
LOC_Os09g28040Os.24721.1.S1_at9/119+17014449..17018852prolyl oligopeptidase family protein, expressed
LOC_Os09g28040OsAffx.5632.1.S1_x_at2/119+17014449..17018852prolyl oligopeptidase family protein, expressed
LOC_Os09g28040OsAffx.5632.1.S1_at2/119+17014449..17018852prolyl oligopeptidase family protein, expressed
LOC_Os09g28050Os.11703.1.S1_at11/119+17023574..17027545aminotransferase, classes I and II family protein, expressed
LOC_Os09g28060Os.19116.1.S1_x_at11/119+17032402..17034507MORN repeat-containing protein, putative, expressed
LOC_Os09g28060Os.19116.1.S1_at11/119+17032402..17034507MORN repeat-containing protein, putative, expressed
LOC_Os09g28060Os.19116.2.S1_at11/119+17032402..17034507MORN repeat-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16158.1.S1_at--1088--9711Chr09:17008976..17009000 (25 bp)
TCAAGTCTCTTTTCAACTCCAACAA
LOC_Os09g28019
Os.16158.1.S1_at--525--2631Chr09:17008934..17008958 (25 bp)
AACCTTTTTGGTACATCTGGATCAG
LOC_Os09g28019
Os.16158.1.S1_at--147--191Chr09:17008893..17008917 (25 bp)
ATTTGGGACAGTCTCTACTCCAACG
LOC_Os09g28019
Os.16158.1.S1_at--299--4491Chr09:17008857..17008881 (25 bp)
GCCGGCTCCATCTGGATTTGGGAAT
LOC_Os09g28019
Os.16158.1.S1_at--498--7611Chr09:17008838..17008862 (25 bp)
GGGAATACAACTCCATCTTTTGCTT
LOC_Os09g28019
Os.16158.1.S1_at--750--9931Chr09:17008281..17008803 (25 bp)
TACGCCGTTCGGAGGTGGAGCTACA
LOC_Os09g28019
Os.16158.1.S1_at--717--5911Chr09:17008264..17008288 (25 bp)
GAGCTACAGCTTCAGGATCCAGCTT
LOC_Os09g28019
Os.16158.1.S1_at--207--6371Chr09:17008251..17008273 (23 bp)
GATCCAGCTTTGGTGGTACATCTAA
LOC_Os09g28019
Os.16158.1.S1_at--687--10651Chr09:17007991..17008015 (25 bp)
TTCCTCGTCTTTCATTTTTCCAAGA
LOC_Os09g28019
Os.16158.1.S1_at--127--2011Chr09:17007873..17007897 (25 bp)
ACTCATATTCCTCCTGTCTTATGGA
LOC_Os09g28019
Os.16158.1.S1_at--948--10111Chr09:17007774..17007798 (25 bp)
TATGTGCCCCATTTCAGTACTATCA
LOC_Os09g28019
Target Sequence 
TCAAGTCTCTTTTCAACTCCAACAACTCCAACTCTATCCAGCAACCTTTTTGGTACATCTGGATCAGCCCAGCTGTCCAC
ACCATTTGGGACAGTCTCTACTCCAACGCTTGGATCAACGCCGGCTCCATCTGGATTTGGGAATACAACTCCATCTTTTG
CTTCAACGCCCGCTTTAGGNTGGAACCTCACTGTTTTNTACGCCGTTCGGAGGTGGAGCTACAGCTTCAGGATCCAGCTT
TGGTGGTACATCTAAAGTGCGGTCAAAACCTCGGGGCCGACGCTAGGTGTAGCTGATGAGCGTGAAATGTGGGTGCCTCT
TGTATCTCTTTTTCCTCGTCTTTCATTTTTCCAAGAATGCGCAAAATATTTGCGTCTTTTCATTAAGACANGAGGGAAAG
GTTCTCACCAGTGGTTACAAATTGGTCTGAACTATGGAAACATATTTCAGACTCATATTCCTCCTGTCTTATGGAAAGAA
CTTGTAATTAATTTATCGGTGATTGTAGTGGAGCATGATTGGTTTTGTGACACTTAATAGATTCTAATGTATGTGCCCCA
TTTCAGTACTATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16158.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis