Browse Element(s) Details


Os.11703.1.S1_at

Description gb:AK120288.1
DB_XREF= gi:37989911
TID=Os.11703.1
CNT=27
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11703 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013050C15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013050C15, full insert sequence.
FL= gb:AK119212.1 gb:AK120288.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2805011/11aminotransferase, classes I and II family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g27990Os.8782.1.S1_at11/119+16998460..17000373Annexin family protein, expressed
LOC_Os09g27990Os.46749.1.S1_x_at11/119+16998460..17000373Annexin family protein, expressed
LOC_Os09g28000Os.27824.1.S1_at11/119+17002039..17004693signal peptidase I family protein, expressed
LOC_Os09g28000OsAffx.12450.2.S1_x_at1/119+17002039..17004693signal peptidase I family protein, expressed
LOC_Os09g28019Os.16158.1.S1_at11/119+17007755..17013359nucleoporin, putative, expressed
LOC_Os09g28040Os.24721.1.S1_at9/119+17014449..17018852prolyl oligopeptidase family protein, expressed
LOC_Os09g28040OsAffx.5632.1.S1_x_at2/119+17014449..17018852prolyl oligopeptidase family protein, expressed
LOC_Os09g28040OsAffx.5632.1.S1_at2/119+17014449..17018852prolyl oligopeptidase family protein, expressed
LOC_Os09g28050Os.11703.1.S1_at11/119+17023574..17027545aminotransferase, classes I and II family protein, expressed
LOC_Os09g28060Os.19116.1.S1_x_at11/119+17032402..17034507MORN repeat-containing protein, putative, expressed
LOC_Os09g28060Os.19116.1.S1_at11/119+17032402..17034507MORN repeat-containing protein, putative, expressed
LOC_Os09g28060Os.19116.2.S1_at11/119+17032402..17034507MORN repeat-containing protein, putative, expressed
LOC_Os09g28070NANA9+17043745..17047410retrotransposon protein, putative, unclassified
LOC_Os09g28080NANA9+17048048..17051339retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0004069molecular_functionaspartate transaminase activity
GO:0008483molecular_functiontransaminase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11703.1.S1_at--1064--5291Chr09:17026959..17026983 (25 bp)
GAAGGCATTGCTAGTCAACGGACTC
LOC_Os09g28050
Os.11703.1.S1_at--880--5011Chr09:17026990..17027014 (25 bp)
GCAGGTTTCATTGTCTATCCTTCAA
LOC_Os09g28050
Os.11703.1.S1_at--874--5471Chr09:17027018..17027042 (25 bp)
GAACATACTTCGTCATGGTCGACCA
LOC_Os09g28050
Os.11703.1.S1_at--60--2171Chr09:17027042..17027066 (25 bp)
ACACCCCATTTGGTTTCGACAATGA
LOC_Os09g28050
Os.11703.1.S1_at--852--5311Chr09:17027095..17027119 (25 bp)
GAAGTCGGTGTTGTCGCCATACCAC
LOC_Os09g28050
Os.11703.1.S1_at--782--7111Chr09:17027338..17027362 (25 bp)
GTCAGTGACTTCATCTCTATTGTCG
LOC_Os09g28050
Os.11703.1.S1_at--261--10231Chr09:17027355..17027379 (25 bp)
TATTGTCGTTTGTATTTGGCTGTGC
LOC_Os09g28050
Os.11703.1.S1_at--46--4791Chr09:17027405..17027429 (25 bp)
GCTGCCATTACACTTTTGTAGCCTA
LOC_Os09g28050
Os.11703.1.S1_at--185--9791Chr09:17027428..17027452 (25 bp)
TAAGTAGCAATCTGCGGCCCCTATT
LOC_Os09g28050
Os.11703.1.S1_at--747--8411Chr09:17027443..17027467 (25 bp)
GGCCCCTATTTGCTCAAGTTGTTTT
LOC_Os09g28050
Os.11703.1.S1_at--948--8771Chr09:17027462..17027486 (25 bp)
TGTTTTCTATACCTACCATTTCACT
LOC_Os09g28050
Target Sequence 
GAAGGCATTGCTAGTCAACGGACTCAAGGATGCAGGTTTCATTGTCTATCCTTCAAGTGGAACATACTTCGTCATGGTCG
ACCACACCCCATTTGGTTTCGACAATGATATTGAGTTCTGCGAGTATTTGATTCGCGAAGTCGGTGTTGTCGCCATACCA
CCTAGTGTATTTTATCTCAACCCTGAGGATGGGAAGAACTTGGTGAGGTTCACCTTTTGCAAGGATGATGAGACGCTGAG
AGCCGCGGTTGAGAGGATGAAGACAAAGCTCAGGAAAAAATGATGCCAGCAATCACATGTGGCTATTGAATTTTGAATAA
TTTGCCTGATCAGAATTGCATTCAAAATGCATGTACTGTTCTAGCGATAGTGTTATCCTGTCAGTGACTTCATCTCTATT
GTCGTTTGTATTTGGCTGTGCAAGCGAATATGATGGTTCAGGATTTGCTGCCATTACACTTTTGTAGCCTAAGTAGCAAT
CTGCGGCCCCTATTTGCTCAAGTTGTTTTCTATACCTACCATTTCACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11703.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis