Browse Element(s) Details


Os.19116.1.S1_x_at

Description gb:AK107054.1
DB_XREF= gi:32992263
TID=Os.19116.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19116 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-121-D05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-121-D05, full insert sequence.
FL= gb:AK107054.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2806011/11MORN repeat-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g28019Os.16158.1.S1_at11/119+17007755..17013359nucleoporin, putative, expressed
LOC_Os09g28040Os.24721.1.S1_at9/119+17014449..17018852prolyl oligopeptidase family protein, expressed
LOC_Os09g28040OsAffx.5632.1.S1_x_at2/119+17014449..17018852prolyl oligopeptidase family protein, expressed
LOC_Os09g28040OsAffx.5632.1.S1_at2/119+17014449..17018852prolyl oligopeptidase family protein, expressed
LOC_Os09g28050Os.11703.1.S1_at11/119+17023574..17027545aminotransferase, classes I and II family protein, expressed
LOC_Os09g28060Os.19116.1.S1_x_at11/119+17032402..17034507MORN repeat-containing protein, putative, expressed
LOC_Os09g28060Os.19116.1.S1_at11/119+17032402..17034507MORN repeat-containing protein, putative, expressed
LOC_Os09g28060Os.19116.2.S1_at11/119+17032402..17034507MORN repeat-containing protein, putative, expressed
LOC_Os09g28070NANA9+17043745..17047410retrotransposon protein, putative, unclassified
LOC_Os09g28080NANA9+17048048..17051339retrotransposon protein, putative, unclassified
LOC_Os09g28090NANA9+17052919..17053350retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g28100Os.27663.1.A1_at11/119+17058794..17061350Rhomboid family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016307molecular_functionphosphatidylinositol phosphate kinase activity
GO:0016308molecular_function1-phosphatidylinositol-4-phosphate 5-kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19116.1.S1_x_at--781--8851Chr09:17032973..17032997 (25 bp)
TGATCCTTCTGTTCAGCGTGCTGTA
LOC_Os09g28060
Os.19116.1.S1_x_at--8--411Chr09:17032919..17032943 (25 bp)
ATCAGCTTATGGGTTACAATTGCAA
LOC_Os09g28060
Os.19116.1.S1_x_at--533--10731Chr09:17032893..17032917 (25 bp)
TTGCTTGTGGTGTTCTAATGGTTGC
LOC_Os09g28060
Os.19116.1.S1_x_at--134--4951Chr09:17032870..17032894 (25 bp)
GCATTGTACAATTAGGCAGCGCAAC
LOC_Os09g28060
Os.19116.1.S1_x_at--734--2531Chr09:17032848..17032872 (25 bp)
AACTAGCTGCGGAGAACGCGTTTCA
LOC_Os09g28060
Os.19116.1.S1_x_at--89--1811Chr09:17032833..17032857 (25 bp)
ACGCGTTTCACCTGCCGAGAGTAGA
LOC_Os09g28060
Os.19116.1.S1_x_at--894--10011Chr09:17032812..17032836 (25 bp)
TAGACGAGCAGGTTCACAAGGCGGT
LOC_Os09g28060
Os.19116.1.S1_x_at--6--3311Chr09:17032798..17032822 (25 bp)
CACAAGGCGGTCATGGCTGCTAATA
LOC_Os09g28060
Os.19116.1.S1_x_at--808--7891Chr09:17032607..17032631 (25 bp)
GGTTCAGTTCAGACGACCGGAGCAA
LOC_Os09g28060
Os.19116.1.S1_x_at--1058--4911Chr09:17032574..17032598 (25 bp)
GCTTGCCCCGAGTCAGAGAGTTCAG
LOC_Os09g28060
Os.19116.1.S1_x_at--6--8091Chr09:17032523..17032547 (25 bp)
GGAGCTGACAATTTTGTTTCGCAAA
LOC_Os09g28060
Target Sequence 
TGATCCTTCTGTTCAGCGTGCTGTACAGGTATATATATACACATTGATCTAACTATCAGCTTATGGGTTACAATTGCAAA
TTGCTTGTGGTGTTCTAATGGTTGCATTGTACAATTAGGCAGCGCAACTAGCTGCGGAGAACGCGTTTCACCTGCCGAGA
GTAGACGAGCAGGTTCACAAGGCGGTCATGGCTGCTAATAGGGCAGCCACGGCTGCTCGGGTAGNGGNGATCAAGGCGGT
NCAGAACAGGATGGANGGGAANTTCTGTGANACCTATGTGTGAGTGAGTGTGTNGTGAAGAAACCATGGCTTTCNTTCNT
TCTAACTGNACATTAGGGTAGCGAAGGACAATAACTAATCGGTTGAGGTTCAGTTCAGACGACCGGAGCAAGCACAACCG
CTTGCCCCGAGTCAGAGAGTTCAGCAAAGAACGGGAGCCGCCGGGAGNGCGGAGCTGACAATTTTGTTTCGCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19116.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis