Browse Element(s) Details


Os.27663.1.A1_at

Description gb:AK107657.1
DB_XREF= gi:32992866
TID=Os.27663.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.27663 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-131-G06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-131-G06, full insert sequence.
FL= gb:AK107657.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2810011/11Rhomboid family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g28060Os.19116.1.S1_x_at11/119+17032402..17034507MORN repeat-containing protein, putative, expressed
LOC_Os09g28060Os.19116.1.S1_at11/119+17032402..17034507MORN repeat-containing protein, putative, expressed
LOC_Os09g28060Os.19116.2.S1_at11/119+17032402..17034507MORN repeat-containing protein, putative, expressed
LOC_Os09g28070NANA9+17043745..17047410retrotransposon protein, putative, unclassified
LOC_Os09g28080NANA9+17048048..17051339retrotransposon protein, putative, unclassified
LOC_Os09g28090NANA9+17052919..17053350retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g28100Os.27663.1.A1_at11/119+17058794..17061350Rhomboid family protein, expressed
LOC_Os09g28110Os.10060.1.S1_at11/119+17061565..17066526hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os09g28120Os.48051.1.S1_at11/119+17070782..17073107F-box domain containing protein, expressed
LOC_Os09g28130OsAffx.6424.1.S1_at11/119+17074189..17074708dioscorin A, putative, expressed
LOC_Os09g28140NANA9+17075443..17075769retrotransposon protein, putative, unclassified
LOC_Os09g28150Os.49643.1.S1_at11/119+17076677..17078623Eukaryotic-type carbonic anhydrase family protein, expressed
LOC_Os09g28150Os.54455.1.S1_at1/119+17076677..17078623Eukaryotic-type carbonic anhydrase family protein, expressed
LOC_Os09g28160Os.23183.1.S1_at11/119+17081094..17082565Phosphate carrier protein, mitochondrial precursor, putative, expressed
LOC_Os09g28160OsAffx.17942.1.S1_at11/119+17081094..17082565Phosphate carrier protein, mitochondrial precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27663.1.A1_at--59--3791Chr09:17060813..17060837 (25 bp)
CTCGGTCCAGCTTGGCAATATCAAT
LOC_Os09g28100
Os.27663.1.A1_at--353--5871Chr09:17060856..17060880 (25 bp)
GAGCGGTGTTCAAAGACAATGCCCC
LOC_Os09g28100
Os.27663.1.A1_at--1122--591Chr09:17060874..17060898 (25 bp)
ATGCCCCTATTCTCCAACTAAGCAA
LOC_Os09g28100
Os.27663.1.A1_at--1158--1911Chr09:17060933..17060957 (25 bp)
ACGGATTCCTAACTTGTGTGGGACA
LOC_Os09g28100
Os.27663.1.A1_at--710--5631Chr09:17060990..17061014 (25 bp)
GACACTGCCATTCTGCCAAGGTGAT
LOC_Os09g28100
Os.27663.1.A1_at--722--8011Chr09:17061015..17061039 (25 bp)
GGAGTGGACGCCTAGTTTGGACTTT
LOC_Os09g28100
Os.27663.1.A1_at--45--10211Chr09:17061047..17061071 (25 bp)
TATTTCCAGGGAAACTCCAGCTCCA
LOC_Os09g28100
Os.27663.1.A1_at--962--1551Chr09:17061065..17061089 (25 bp)
AGCTCCAAATCTTACGCAAGGGCGA
LOC_Os09g28100
Os.27663.1.A1_at--267--7571Chr09:17061084..17061108 (25 bp)
GGGCGACATTTGAGTTCACCTGAGT
LOC_Os09g28100
Os.27663.1.A1_at--1076--1071Chr09:17061208..17061232 (25 bp)
AGTGTTACTGGAGCCCAACTGGCAC
LOC_Os09g28100
Os.27663.1.A1_at--488--8251Chr09:17061228..17061252 (25 bp)
GGCACGGTGTACATGAATCCATATT
LOC_Os09g28100
Target Sequence 
CTCGGTCCAGCTTGGCAATATCAATATGTGTCAAAGGACGGAAGAGCGGTGTTCAAAGACAATGCCCCTATTCTCCAACT
AAGCAACGGGAAATGGTTGAGGTAGAATTTTGTATTTAAAACGGATTCCTAACTTGTGTGGGACACAGAAATTGAAGACT
GAAGAGAGGTGGGGTTTGACACTGCCATTCTGCCAAGGTGATGGAGTGGACGCCTAGTTTGGACTTTGGAAAGCTATTTC
CAGGGAAACTCCAGCTCCAAATCTTACGCAAGGGCGACATTTGAGTTCACCTGAGTCATTATTTTTGGATATAAGTTGCA
ATTGTCTACTGTGACAGATTATAGCTAATCAATACTCAAATAGTCACCACAGCAATTGTATTTAACATGCTTATCAGTGT
TACTGGAGCCCAACTGGCACGGTGTACATGAATCCATATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27663.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis