Browse Element(s) Details


Os.49643.1.S1_at

Description gb:AK111065.1
DB_XREF= gi:32996274
TID=Os.49643.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49643 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-175-D12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-175-D12, full insert sequence.
FL= gb:AK111065.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2815011/11Eukaryotic-type carbonic anhydrase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g28090NANA9+17052919..17053350retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g28100Os.27663.1.A1_at11/119+17058794..17061350Rhomboid family protein, expressed
LOC_Os09g28110Os.10060.1.S1_at11/119+17061565..17066526hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os09g28120Os.48051.1.S1_at11/119+17070782..17073107F-box domain containing protein, expressed
LOC_Os09g28130OsAffx.6424.1.S1_at11/119+17074189..17074708dioscorin A, putative, expressed
LOC_Os09g28140NANA9+17075443..17075769retrotransposon protein, putative, unclassified
LOC_Os09g28150Os.49643.1.S1_at11/119+17076677..17078623Eukaryotic-type carbonic anhydrase family protein, expressed
LOC_Os09g28150Os.54455.1.S1_at1/119+17076677..17078623Eukaryotic-type carbonic anhydrase family protein, expressed
LOC_Os09g28160Os.23183.1.S1_at11/119+17081094..17082565Phosphate carrier protein, mitochondrial precursor, putative, expressed
LOC_Os09g28160OsAffx.17942.1.S1_at11/119+17081094..17082565Phosphate carrier protein, mitochondrial precursor, putative, expressed
LOC_Os09g28170OsAffx.26553.2.S1_at2/119+17089942..17090322hypothetical protein
LOC_Os09g28180Os.18717.2.S1_at11/119+17090957..17094316D-mannose binding lectin family protein, expressed
LOC_Os09g28180OsAffx.27348.1.S1_x_at2/119+17090957..17094316D-mannose binding lectin family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006730biological_processone-carbon compound metabolism
GO:0004089molecular_functioncarbonate dehydratase activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49643.1.S1_at--320--5311Chr09:17078124..17078148 (25 bp)
GAAGGAGCCGCTGATGCAAGCCTAC
LOC_Os09g28150
Os.49643.1.S1_at--456--3231Chr09:17077246..17077270 (25 bp)
CAAGCAGGTGCACTGGCATGAACCC
LOC_Os09g28150
Os.49643.1.S1_at--256--2651Chr09:17077036..17077057 (22 bp)
AACCAGGTTCGACGCAGAGATGCAC
LOC_Os09g28150
Os.49643.1.S1_at--1040--6311Chr09:17077018..17077042 (25 bp)
GATGCACATGGTTCACGAGGACCCC
LOC_Os09g28150
Os.49643.1.S1_at--279--971Chr09:17077001..17077025 (25 bp)
AGGACCCCAGCATGGCGAGAGCCGT
LOC_Os09g28150
Os.49643.1.S1_at--365--9411Chr09:17076977..17077001 (25 bp)
TCGTCTCTGTGCTGTTGAGCACCAA
LOC_Os09g28150
Os.49643.1.S1_at--817--2591Chr09:17076939..17076963 (25 bp)
AACGCAGTGCTCACCGAGGTAGTAA
LOC_Os09g28150
Os.49643.1.S1_at--830--6911Chr09:17076921..17076945 (25 bp)
GTAGTAACAACGACGTGCCTCACCG
LOC_Os09g28150
Os.49643.1.S1_at--407--9671Chr09:17076902..17076926 (25 bp)
TCACCGTTCACCTGAAATGGTTCGT
LOC_Os09g28150
Os.49643.1.S1_at--1009--811Chr09:17076886..17076910 (25 bp)
ATGGTTCGTTTCCATTTCATCTCCC
LOC_Os09g28150
Os.49643.1.S1_at--1030--9991Chr09:17076718..17076742 (25 bp)
TAGCTAGCACGGTAGCACCCATGTC
LOC_Os09g28150
Target Sequence 
GAAGGAGCCGCTGATGCAAGCCTACAAGGCCGGCGCCACCACCATTCAGAACCGAGGCCACGACTACATGCTGAAATGGA
AAGATGGGAATAGCAAGCTGACGGTCCAAGGGAAGGAGTACACGCTCAAGCAGGTGCACTGGCATGAACCCTCCGAGCAC
ACAATCAACGGAACCAGGTTCGACGCAGAGATGCACATGGTTCACGAGGACCCCAGCATGGCGAGAGCCGTCGTCTCTGT
GCTGTTGAGCACCAAAGCAGGCCAACCCAACGCAGTGCTCACCGAGGTAGTAACAACGACGTGCCTCACCGTTCACCTGA
AATGGTTCGTTTCCATTTCATCTCCCACGGAGAGGCCAAGAAATGGAAATGAACACATCTAGATGAATTGTGAATACTAA
CTAGAAAGTACTTGATGTCAAATAGTGATCTTTAGTACTGGTAAGTGGTACTGTATAACCCAATATGGTACATGGAAGAT
TGGAAGTGCTAGCTAGCACGGTAGCACCCATGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49643.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis