Browse Element(s) Details


Os.27824.1.S1_at

Description gb:AK120096.1
DB_XREF= gi:37989719
TID=Os.27824.1
CNT=19
FEA=FLmRNA
TIER=FL+Stack
STK=9
UG=Os.27824 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013022A21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013022A21, full insert sequence.
FL= gb:AK120096.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2800011/11signal peptidase I family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g27940Os.54580.1.S1_at11/119+16976481..16977927Eukaryotic aspartyl protease family protein, expressed
LOC_Os09g27950Os.23468.1.A1_at11/119+16979036..16982866Avr9 elicitor response protein, putative, expressed
LOC_Os09g27960Os.9325.1.S1_at11/119+16987172..16989405Uncharacterised protein family containing protein, expressed
LOC_Os09g27960Os.9325.2.S1_at5/119+16987172..16989405Uncharacterised protein family containing protein, expressed
LOC_Os09g27970NANA9+16991505..16992747hypothetical protein
LOC_Os09g27980OsAffx.17941.2.S1_at10/119+16995554..16998348emp24/gp25L/p24 family protein, expressed
LOC_Os09g27990Os.8782.1.S1_at11/119+16998460..17000373Annexin family protein, expressed
LOC_Os09g27990Os.46749.1.S1_x_at11/119+16998460..17000373Annexin family protein, expressed
LOC_Os09g28000Os.27824.1.S1_at11/119+17002039..17004693signal peptidase I family protein, expressed
LOC_Os09g28000OsAffx.12450.2.S1_x_at1/119+17002039..17004693signal peptidase I family protein, expressed
LOC_Os09g28019Os.16158.1.S1_at11/119+17007755..17013359nucleoporin, putative, expressed
LOC_Os09g28040Os.24721.1.S1_at9/119+17014449..17018852prolyl oligopeptidase family protein, expressed
LOC_Os09g28040OsAffx.5632.1.S1_x_at2/119+17014449..17018852prolyl oligopeptidase family protein, expressed
LOC_Os09g28040OsAffx.5632.1.S1_at2/119+17014449..17018852prolyl oligopeptidase family protein, expressed
LOC_Os09g28050Os.11703.1.S1_at11/119+17023574..17027545aminotransferase, classes I and II family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0016020cellular_componentmembrane
GO:0008233molecular_functionpeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27824.1.S1_at--99--8811Chr09:17003084..17003108 (25 bp)
TGTTGGAGCCTCACAATTACGAGAT
LOC_Os09g28000
Os.27824.1.S1_at--262--5451Chr09:17002653..17003082 (25 bp)
GAACCCATGCTTGTTCCAGAAGGTT
LOC_Os09g28000
Os.27824.1.S1_at--24--7651Chr09:17002615..17002639 (25 bp)
GGGAGACAACCGTAACAACAGCTTC
LOC_Os09g28000
Os.27824.1.S1_at--415--2811Chr09:17002456..17002480 (25 bp)
AAGATCTGTGTTTCGGTACTGGCCT
LOC_Os09g28000
Os.27824.1.S1_at--69--7851Chr09:17002442..17002466 (25 bp)
GGTACTGGCCTCCATCAAGAATAAC
LOC_Os09g28000
Os.27824.1.S1_at--529--5871Chr09:17002404..17002428 (25 bp)
GAGCCTCGCGCTGAATATTCTGTGG
LOC_Os09g28000
Os.27824.1.S1_at--812--7191Chr09:17002372..17002396 (25 bp)
GTCGTGAGGTGTATCCAGACCTTCT
LOC_Os09g28000
Os.27824.1.S1_at--280--1391Chr09:17002356..17002380 (25 bp)
AGACCTTCTGGCCATGCTGGATAGC
LOC_Os09g28000
Os.27824.1.S1_at--458--9131Chr09:17002342..17002366 (25 bp)
TGCTGGATAGCCGATGTGTCATACT
LOC_Os09g28000
Os.27824.1.S1_at--483--7451Chr09:17002327..17002351 (25 bp)
GTGTCATACTCTTTTGTGGAGCTCC
LOC_Os09g28000
Os.27824.1.S1_at--75--7531Chr09:17002312..17002336 (25 bp)
GTGGAGCTCCACTTATGAGCCGAGC
LOC_Os09g28000
Target Sequence 
TGTTGGAGCCTCACAATTACGAGATGGAACCCATGCTTGTTCCAGAAGGTTATGTGTTTGTGCTGGGAGACAACCGTAAC
AACAGCTTCGATTCCCATAACTGGGGGCCTCTTCCTGTGAGGAACATTATTGGAAGATCTGTGTTTCGGTACTGGCCTCC
ATCAAGAATAACAGATACAATATACGAGCCTCGCGCTGAATATTCTGTGGCTGGGTTGTCGTGAGGTGTATCCAGACCTT
CTGGCCATGCTGGATAGCCGATGTGTCATACTCTTTTGTGGAGCTCCACTTATGAGCCGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27824.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis