Browse Element(s) Details


OsAffx.3833.1.S1_at

Description tigr:9632.m01844
TID=OsAffx.3833.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2020011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g20164Os.11835.4.S1_x_at11/114+11211740..11219275Copper amine oxidase, enzyme domain containing protein, expressed
LOC_Os04g20164Os.11835.3.S1_x_at11/114+11211740..11219275Copper amine oxidase, enzyme domain containing protein, expressed
LOC_Os04g20180OsAffx.26077.1.S1_at11/114+11222511..11226645GDSL-like Lipase/Acylhydrolase family protein
LOC_Os04g20180Os.7905.1.S1_at1/114+11222511..11226645GDSL-like Lipase/Acylhydrolase family protein
LOC_Os04g20180OsAffx.30455.1.S1_at1/114+11222511..11226645GDSL-like Lipase/Acylhydrolase family protein
LOC_Os04g20189NANA4+11228900..11229157NA
LOC_Os04g20200OsAffx.3833.1.S1_at11/114+11233340..11236710hypothetical protein
LOC_Os04g20200Os.25466.1.S1_at4/114+11233340..11236710hypothetical protein
LOC_Os04g20200Os.25340.1.A1_at4/114+11233340..11236710hypothetical protein
LOC_Os04g20210Os.50289.1.S1_at11/114+11239821..11246802expressed protein
LOC_Os04g20220OsAffx.26078.1.S1_at11/114+11247793..11261590G1 to S phase transition protein 1 homolog, putative, expressed
LOC_Os04g20220Os.16925.1.S1_at10/114+11247793..11261590G1 to S phase transition protein 1 homolog, putative, expressed
LOC_Os04g20220OsAffx.26078.1.S1_s_at9/114+11247793..11261590G1 to S phase transition protein 1 homolog, putative, expressed
LOC_Os04g20220Os.16925.1.S2_at9/114+11247793..11261590G1 to S phase transition protein 1 homolog, putative, expressed
LOC_Os04g20220Os.39411.1.A1_at2/114+11247793..11261590G1 to S phase transition protein 1 homolog, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3833.1.S1_at--903--7451Chr04:11235679..11235703 (25 bp)
GTGTCGGTCACCAAGGCTCGAGTTC
LOC_Os04g20200
OsAffx.3833.1.S1_at--454--8211Chr04:11235922..11235946 (25 bp)
GGAATGCGTACCAGAGCCAGTCAGT
LOC_Os04g20200
OsAffx.3833.1.S1_at--996--3791Chr04:11236004..11236028 (25 bp)
CTCGCCGCTGAAGAATGGCTGGATG
LOC_Os04g20200
OsAffx.3833.1.S1_at--918--2491Chr04:11236091..11236115 (25 bp)
AACATGGTGGGCAATGTTGGCGCCC
LOC_Os04g20200
OsAffx.3833.1.S1_at--519--4571Chr04:11236116..11236140 (25 bp)
GCGCTGTCCCTGACGACGAAGGAGC
LOC_Os04g20200
OsAffx.3833.1.S1_at--220--5314Chr04:11236133..11236157 (25 bp)
GAAGGAGCATGTGACGTCGAAGCAA
LOC_Os04g20200
OsAffx.3833.1.S1_at--1028--7351Chr04:11236143..11236628 (25 bp)
GTGACGTCGAAGCAACAAGTGAGTT
LOC_Os04g20200
OsAffx.3833.1.S1_at--969--5131Chr04:11236154..11236639 (25 bp)
GCAACAAGTGAGTTCGGGCGATGTC
LOC_Os04g20200
OsAffx.3833.1.S1_at--658--1231Chr04:11236625..11236649 (25 bp)
AGTTCGGGCGATGTCCCATGACAAA
LOC_Os04g20200
OsAffx.3833.1.S1_at--1002--7231Chr04:11236637..11236661 (25 bp)
GTCCCATGACAAACCACGAAGTCGA
LOC_Os04g20200
OsAffx.3833.1.S1_at--21--5331Chr04:11236654..11236678 (25 bp)
GAAGTCGAAGTGTCCCGTAGCAAAA
LOC_Os04g20200
Target Sequence 
GTGTCGGTCACCAAGGCTCGAGTTCGTCGCGGCAGAGGAGATGGCGAGGACGGCGGGAGCAGCCACCGCGGCTCTCGCGC
GGAGGACGGCGAGGAGGAGAGTCGCGTTGTCGTCGCCAATTGCGGCCACTCCCACAGTGGAGGACGACGAGGACGGTCGG
AGCGGCTGCTGCAGCGCTCACGGCGGGAGCGGCGGACGACGGCAAGGCCGTGGCGATGCGGCACGGGGCAGCGCCGGGCG
GAAGGAATGCGTACCAGAGCCAGTCAGTGCGCGGGACGGAGATGATGAGTGCGCCGACGAGGCGGAGCTCGGCGGGGGTG
CGCTCCTCGCCGCTGAAGAATGGCTGGATGGCGATGAGGCCGGCGAGGCGGAGGTTGGCGAAGGTAGTGGAGGCGAGGGC
GTAGCGACGGGCAACATGGTGGGCAATGTTGGCGCCCGCGCTGTCCCTGACGACGAAGGAGCATGTGACGTCGAAGCAAC
AAGTGAGTTCGGGCGATGTCCCATGACAAACCACGAAGTCGAAGTGTCCCGTAGCAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3833.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis