Browse Element(s) Details


Os.16925.1.S1_at

Description gb:AK107968.1
DB_XREF= gi:32993177
TID=Os.16925.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16925 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-135-D04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-135-D04, full insert sequence.
FL= gb:AK105823.1 gb:AK107968.1 gb:AK063713.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2022010/11G1 to S phase transition protein 1 homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g20180OsAffx.26077.1.S1_at11/114+11222511..11226645GDSL-like Lipase/Acylhydrolase family protein
LOC_Os04g20180Os.7905.1.S1_at1/114+11222511..11226645GDSL-like Lipase/Acylhydrolase family protein
LOC_Os04g20180OsAffx.30455.1.S1_at1/114+11222511..11226645GDSL-like Lipase/Acylhydrolase family protein
LOC_Os04g20189NANA4+11228900..11229157NA
LOC_Os04g20200OsAffx.3833.1.S1_at11/114+11233340..11236710hypothetical protein
LOC_Os04g20200Os.25466.1.S1_at4/114+11233340..11236710hypothetical protein
LOC_Os04g20200Os.25340.1.A1_at4/114+11233340..11236710hypothetical protein
LOC_Os04g20210Os.50289.1.S1_at11/114+11239821..11246802expressed protein
LOC_Os04g20220OsAffx.26078.1.S1_at11/114+11247793..11261590G1 to S phase transition protein 1 homolog, putative, expressed
LOC_Os04g20220Os.16925.1.S1_at10/114+11247793..11261590G1 to S phase transition protein 1 homolog, putative, expressed
LOC_Os04g20220OsAffx.26078.1.S1_s_at9/114+11247793..11261590G1 to S phase transition protein 1 homolog, putative, expressed
LOC_Os04g20220Os.16925.1.S2_at9/114+11247793..11261590G1 to S phase transition protein 1 homolog, putative, expressed
LOC_Os04g20220Os.39411.1.A1_at2/114+11247793..11261590G1 to S phase transition protein 1 homolog, putative, expressed
LOC_Os04g20230Os.20498.1.S1_at10/114+11265185..11269440Uncharacterised protein family containing protein, expressed
LOC_Os04g20230OsAffx.13883.1.S1_at8/114+11265185..11269440Uncharacterised protein family containing protein, expressed
LOC_Os04g20230OsAffx.573.1.S1_x_at1/114+11265185..11269440Uncharacterised protein family containing protein, expressed
LOC_Os04g20240OsAffx.27522.1.S1_x_at11/114+11272027..11273254retrotransposon protein, putative, unclassified
LOC_Os04g20240OsAffx.3613.1.S1_x_at1/114+11272027..11273254retrotransposon protein, putative, unclassified
LOC_Os04g20240OsAffx.3613.1.S1_at1/114+11272027..11273254retrotransposon protein, putative, unclassified
LOC_Os04g20249NANA4+11275990..11276633NA
LOC_Os04g20260OsAffx.13884.1.S1_at11/114+11284750..11286306UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0003746molecular_functiontranslation elongation factor activity
GO:0005516molecular_functioncalmodulin binding
GO:0008135molecular_functiontranslation factor activity, nucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16925.1.S1_at--1115--3811Chr04:11247831..11247855 (25 bp)
CTCCACCGAGAGAAGTCCAAATCCT
LOC_Os04g20220
Os.16925.1.S1_at--64--1471Chr04:11247841..11247865 (25 bp)
AGAAGTCCAAATCCTGGACGCTCCG
LOC_Os04g20220
Os.16925.1.S1_at--44--4191Chr04:11247863..11247887 (25 bp)
CCGCGAAAACCCTAGGAACAGCACG
LOC_Os04g20220
Os.16925.1.S1_at--285--3611NONE
CATTGGTCATGTTGATGCTGGAAAA
NONE
Os.16925.1.S1_at--232--6351Chr04:11251854..11251878 (25 bp)
GATGCTGGAAAATCAACTGCCGGAG
LOC_Os04g20220
Os.16925.1.S1_at--1017--3891Chr04:11251858..11251882 (25 bp)
CTGGAAAATCAACTGCCGGAGGGCA
LOC_Os04g20220
Os.16925.1.S1_at--579--9111Chr04:11251871..11251895 (25 bp)
TGCCGGAGGGCAAATACTTTTCTTG
LOC_Os04g20220
Os.16925.1.S1_at--428--9891Chr04:11251885..11251909 (25 bp)
TACTTTTCTTGAGTGGTCAAGTCGA
LOC_Os04g20220
Os.16925.1.S1_at--229--7091Chr04:11251900..11251924 (25 bp)
GTCAAGTCGATGACAGGACCATCCA
LOC_Os04g20220
Os.16925.1.S1_at--771--7211Chr04:11251905..11251929 (25 bp)
GTCGATGACAGGACCATCCAGAAGT
LOC_Os04g20220
Os.16925.1.S1_at--528--6311Chr04:11251908..11251932 (25 bp)
GATGACAGGACCATCCAGAAGTATG
LOC_Os04g20220
Target Sequence 
CTCCACCGAGAGAAGTCCAAATCCTGGACGCTCCGCGAAAACCCTAGGAACAGCACGCACGCTGTCCCCAAGCACCACCA
GCGCCTCCACGCCACGCGCTTGCCTTTGCCTTTGCTCCAGCTCGCGAGACGCCGGGGATGGAGCACGACGCGCACGCCCC
GCCGCCTGCCGCGCAGGAGCTCGGCGACGCCTCCGCCTCCGCCTCCGTCGTCGACGACTGGGCGCGCGACGAGGACACCG
AGCCGATGGCCGTGGATCCCCACCACGCCGCCGCCGCCGCCGCCACCGCCACTGAGGACGGCGAGGGCGTGGCGGATGCC
GCTCCTCCCGCGGCCCCGGCTGAAGATGTTACAGAAATTCAATCATCACTACAGTCCTTGGAGTTGAAGACGAATGCTGC
TGCACATGAGGATGCTCAAGAGGTAGTAGAGGAGGAAAAGGAAACAAAGCGGCATTTGAATGTGGTTTTCATTGGTCATG
TTGATGCTGGAAAATCAACTGCCGGAGGGCAAATACTTTTCTTGAGTGGTCAAGTCGATGACAGGACCATCCAGAAGTAT
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16925.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis