Browse Element(s) Details


OsAffx.26078.1.S1_at

Description tigr:9632.m01846
TID=OsAffx.26078.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2022011/11G1 to S phase transition protein 1 homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g20180OsAffx.26077.1.S1_at11/114+11222511..11226645GDSL-like Lipase/Acylhydrolase family protein
LOC_Os04g20180Os.7905.1.S1_at1/114+11222511..11226645GDSL-like Lipase/Acylhydrolase family protein
LOC_Os04g20180OsAffx.30455.1.S1_at1/114+11222511..11226645GDSL-like Lipase/Acylhydrolase family protein
LOC_Os04g20189NANA4+11228900..11229157NA
LOC_Os04g20200OsAffx.3833.1.S1_at11/114+11233340..11236710hypothetical protein
LOC_Os04g20200Os.25466.1.S1_at4/114+11233340..11236710hypothetical protein
LOC_Os04g20200Os.25340.1.A1_at4/114+11233340..11236710hypothetical protein
LOC_Os04g20210Os.50289.1.S1_at11/114+11239821..11246802expressed protein
LOC_Os04g20220OsAffx.26078.1.S1_at11/114+11247793..11261590G1 to S phase transition protein 1 homolog, putative, expressed
LOC_Os04g20220Os.16925.1.S1_at10/114+11247793..11261590G1 to S phase transition protein 1 homolog, putative, expressed
LOC_Os04g20220OsAffx.26078.1.S1_s_at9/114+11247793..11261590G1 to S phase transition protein 1 homolog, putative, expressed
LOC_Os04g20220Os.16925.1.S2_at9/114+11247793..11261590G1 to S phase transition protein 1 homolog, putative, expressed
LOC_Os04g20220Os.39411.1.A1_at2/114+11247793..11261590G1 to S phase transition protein 1 homolog, putative, expressed
LOC_Os04g20230Os.20498.1.S1_at10/114+11265185..11269440Uncharacterised protein family containing protein, expressed
LOC_Os04g20230OsAffx.13883.1.S1_at8/114+11265185..11269440Uncharacterised protein family containing protein, expressed
LOC_Os04g20230OsAffx.573.1.S1_x_at1/114+11265185..11269440Uncharacterised protein family containing protein, expressed
LOC_Os04g20240OsAffx.27522.1.S1_x_at11/114+11272027..11273254retrotransposon protein, putative, unclassified
LOC_Os04g20240OsAffx.3613.1.S1_x_at1/114+11272027..11273254retrotransposon protein, putative, unclassified
LOC_Os04g20240OsAffx.3613.1.S1_at1/114+11272027..11273254retrotransposon protein, putative, unclassified
LOC_Os04g20249NANA4+11275990..11276633NA
LOC_Os04g20260OsAffx.13884.1.S1_at11/114+11284750..11286306UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0003746molecular_functiontranslation elongation factor activity
GO:0005516molecular_functioncalmodulin binding
GO:0008135molecular_functiontranslation factor activity, nucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26078.1.S1_at--240--3611Chr04:11249856..11250082 (25 bp)
CATTGGTCATGTTGACCCAGGAAAT
LOC_Os04g20220
OsAffx.26078.1.S1_at--180--7131Chr04:11249861..11250087 (25 bp)
GTCATGTTGACCCAGGAAATTATTT
LOC_Os04g20220
OsAffx.26078.1.S1_at--195--6651Chr04:11250071..11250092 (22 bp)
GTTGACCCAGGAAATTATTTGGCTA
LOC_Os04g20220
OsAffx.26078.1.S1_at--1052--4171Chr04:11250073..11250097 (25 bp)
CCCAGGAAATTATTTGGCTATGCCA
LOC_Os04g20220
OsAffx.26078.1.S1_at--699--10231Chr04:11250085..11250109 (25 bp)
TTTGGCTATGCCAATTTCCACCTTC
LOC_Os04g20220
OsAffx.26078.1.S1_at--505--10131Chr04:11250091..11250115 (25 bp)
TATGCCAATTTCCACCTTCAGGTTT
LOC_Os04g20220
OsAffx.26078.1.S1_at--322--9211Chr04:11250093..11250117 (25 bp)
TGCCAATTTCCACCTTCAGGTTTAT
LOC_Os04g20220
OsAffx.26078.1.S1_at--25--211Chr04:11250098..11250122 (25 bp)
ATTTCCACCTTCAGGTTTATCTCTG
LOC_Os04g20220
OsAffx.26078.1.S1_at--1116--10651Chr04:11250100..11250124 (25 bp)
TTCCACCTTCAGGTTTATCTCTGAT
LOC_Os04g20220
OsAffx.26078.1.S1_at--283--3371Chr04:11250103..11250127 (25 bp)
CACCTTCAGGTTTATCTCTGATGTA
LOC_Os04g20220
OsAffx.26078.1.S1_at--1049--3471Chr04:11250109..11250133 (25 bp)
CAGGTTTATCTCTGATGTATTGTCT
LOC_Os04g20220
Target Sequence 
CATTGGTCATGTTGACCCAGGAAATTATTTGGCTATGCCAATTTCCACCTTCAGGTTTATCTCTGATGTATTGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26078.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis